merge with latest master

lalapps/src/pulsar/Hough/lalapps_SFTclean

+#! /bin/bash
+
+# lalapps_SFTclean - temporary wrapper script for .libs/lalapps_SFTclean
+# Generated by libtool (GNU libtool) 2.4.6
+#
+# The lalapps_SFTclean program cannot be directly executed until all the libtool
+# libraries that it depends on are installed.
+#
+# This wrapper script should never be moved out of the build directory.
+# If it is, it will not operate correctly.
+
+# Sed substitution that helps us do robust quoting.  It backslashifies
+# metacharacters that are still active within double-quoted strings.
+sed_quote_subst='s|\([`"$\\]\)|\\\1|g'
+
+# Be Bourne compatible
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
+  emulate sh
+  NULLCMD=:
+  # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
+  # is contrary to our usage.  Disable this feature.
+  alias -g '${1+"$@"}'='"$@"'
+  setopt NO_GLOB_SUBST
+else
+  case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
+fi
+BIN_SH=xpg4; export BIN_SH # for Tru64
+DUALCASE=1; export DUALCASE # for MKS sh
+
+# The HP-UX ksh and POSIX shell print the target directory to stdout
+# if CDPATH is set.
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
+
+relink_command=""
+
+# This environment variable determines our operation mode.
+if test "$libtool_install_magic" = "%%%MAGIC variable%%%"; then
+  # install mode needs the following variables:
+  generated_by_libtool_version='2.4.6'
+  notinst_deplibs=' /home/bedelman/src/lalsuite/lalinference/src/liblalinference.la /home/bedelman/src/lalsuite/lalpulsar/src/liblalpulsar.la /home/bedelman/src/lalsuite/lalinspiral/src/liblalinspiral.la /home/bedelman/src/lalsuite/lalburst/src/liblalburst.la /home/bedelman/src/lalsuite/lalsimulation/src/liblalsimulation.la /home/bedelman/src/lalsuite/lalmetaio/src/liblalmetaio.la /home/bedelman/src/lalsuite/lalframe/src/liblalframe.la /home/bedelman/src/lalsuite/lal/src/support/liblalsupport.la /home/bedelman/src/lalsuite/lal/src/liblal.la'
+else
+  # When we are sourced in execute mode, $file and $ECHO are already set.
+  if test "$libtool_execute_magic" != "%%%MAGIC variable%%%"; then
+    file="$0"
+
+# A function that is used when there is no print builtin or printf.
+func_fallback_echo ()
+{
+  eval 'cat <<_LTECHO_EOF
+$1
+_LTECHO_EOF'
+}
+    ECHO="printf %s\\n"
+  fi
+
+# Very basic option parsing. These options are (a) specific to
+# the libtool wrapper, (b) are identical between the wrapper
+# /script/ and the wrapper /executable/ that is used only on
+# windows platforms, and (c) all begin with the string --lt-
+# (application programs are unlikely to have options that match
+# this pattern).
+#
+# There are only two supported options: --lt-debug and
+# --lt-dump-script. There is, deliberately, no --lt-help.
+#
+# The first argument to this parsing function should be the
+# script's ../../../libtool value, followed by no.
+lt_option_debug=
+func_parse_lt_options ()
+{
+  lt_script_arg0=$0
+  shift
+  for lt_opt
+  do
+    case "$lt_opt" in
+    --lt-debug) lt_option_debug=1 ;;
+    --lt-dump-script)
+        lt_dump_D=`$ECHO "X$lt_script_arg0" | /bin/sed -e 's/^X//' -e 's%/[^/]*$%%'`
+        test "X$lt_dump_D" = "X$lt_script_arg0" && lt_dump_D=.
+        lt_dump_F=`$ECHO "X$lt_script_arg0" | /bin/sed -e 's/^X//' -e 's%^.*/%%'`
+        cat "$lt_dump_D/$lt_dump_F"
+        exit 0
+      ;;
+    --lt-*)
+        $ECHO "Unrecognized --lt- option: '$lt_opt'" 1>&2
+        exit 1
+      ;;
+    esac
+  done
+
+  # Print the debug banner immediately:
+  if test -n "$lt_option_debug"; then
+    echo "lalapps_SFTclean:lalapps_SFTclean:$LINENO: libtool wrapper (GNU libtool) 2.4.6" 1>&2
+  fi
+}
+
+# Used when --lt-debug. Prints its arguments to stdout
+# (redirection is the responsibility of the caller)
+func_lt_dump_args ()
+{
+  lt_dump_args_N=1;
+  for lt_arg
+  do
+    $ECHO "lalapps_SFTclean:lalapps_SFTclean:$LINENO: newargv[$lt_dump_args_N]: $lt_arg"
+    lt_dump_args_N=`expr $lt_dump_args_N + 1`
+  done
+}
+
+# Core function for launching the target application
+func_exec_program_core ()
+{
+
+      if test -n "$lt_option_debug"; then
+        $ECHO "lalapps_SFTclean:lalapps_SFTclean:$LINENO: newargv[0]: $progdir/$program" 1>&2
+        func_lt_dump_args ${1+"$@"} 1>&2
+      fi
+      exec "$progdir/$program" ${1+"$@"}
+
+      $ECHO "$0: cannot exec $program $*" 1>&2
+      exit 1
+}
+
+# A function to encapsulate launching the target application
+# Strips options in the --lt-* namespace from $@ and
+# launches target application with the remaining arguments.
+func_exec_program ()
+{
+  case " $* " in
+  *\ --lt-*)
+    for lt_wr_arg
+    do
+      case $lt_wr_arg in
+      --lt-*) ;;
+      *) set x "$@" "$lt_wr_arg"; shift;;
+      esac
+      shift
+    done ;;
+  esac
+  func_exec_program_core ${1+"$@"}
+}
+
+  # Parse options
+  func_parse_lt_options "$0" ${1+"$@"}
+
+  # Find the directory that this script lives in.
+  thisdir=`$ECHO "$file" | /bin/sed 's%/[^/]*$%%'`
+  test "x$thisdir" = "x$file" && thisdir=.
+
+  # Follow symbolic links until we get to the real thisdir.
+  file=`ls -ld "$file" | /bin/sed -n 's/.*-> //p'`
+  while test -n "$file"; do
+    destdir=`$ECHO "$file" | /bin/sed 's%/[^/]*$%%'`
+
+    # If there was a directory component, then change thisdir.
+    if test "x$destdir" != "x$file"; then
+      case "$destdir" in
+      [\\/]* | [A-Za-z]:[\\/]*) thisdir="$destdir" ;;
+      *) thisdir="$thisdir/$destdir" ;;
+      esac
+    fi
+
+    file=`$ECHO "$file" | /bin/sed 's%^.*/%%'`
+    file=`ls -ld "$thisdir/$file" | /bin/sed -n 's/.*-> //p'`
+  done
+
+  # Usually 'no', except on cygwin/mingw when embedded into
+  # the cwrapper.
+  WRAPPER_SCRIPT_BELONGS_IN_OBJDIR=no
+  if test "$WRAPPER_SCRIPT_BELONGS_IN_OBJDIR" = "yes"; then
+    # special case for '.'
+    if test "$thisdir" = "."; then
+      thisdir=`pwd`
+    fi
+    # remove .libs from thisdir
+    case "$thisdir" in
+    *[\\/].libs ) thisdir=`$ECHO "$thisdir" | /bin/sed 's%[\\/][^\\/]*$%%'` ;;
+    .libs )   thisdir=. ;;
+    esac
+  fi
+
+  # Try to get the absolute directory name.
+  absdir=`cd "$thisdir" && pwd`
+  test -n "$absdir" && thisdir="$absdir"
+
+  program='lalapps_SFTclean'
+  progdir="$thisdir/.libs"
+
+
+  if test -f "$progdir/$program"; then
+    # Add our own library path to LD_LIBRARY_PATH
+    LD_LIBRARY_PATH="/home/bedelman/src/lalsuite/lalinference/src/.libs:/home/bedelman/src/lalsuite/lalpulsar/src/.libs:/home/bedelman/src/lalsuite/lalinspiral/src/.libs:/home/bedelman/src/lalsuite/lalburst/src/.libs:/home/bedelman/src/lalsuite/lalsimulation/src/.libs:/home/bedelman/src/lalsuite/lalmetaio/src/.libs:/home/bedelman/src/lalsuite/lalframe/src/.libs:/home/bedelman/src/lalsuite/lal/src/support/.libs:/home/bedelman/src/lalsuite/lal/src/.libs:/home/bedelman/opt/lscsoft/libmetaio/lib:/home/bedelman/opt/lscsoft/libframe/lib:$LD_LIBRARY_PATH"
+
+    # Some systems cannot cope with colon-terminated LD_LIBRARY_PATH
+    # The second colon is a workaround for a bug in BeOS R4 sed
+    LD_LIBRARY_PATH=`$ECHO "$LD_LIBRARY_PATH" | /bin/sed 's/::*$//'`
+
+    export LD_LIBRARY_PATH
+
+    if test "$libtool_execute_magic" != "%%%MAGIC variable%%%"; then
+      # Run the actual program with our arguments.
+      func_exec_program ${1+"$@"}
+    fi
+  else
+    # The program doesn't exist.
+    $ECHO "$0: error: '$progdir/$program' does not exist" 1>&2
+    $ECHO "This script is just a wrapper for $program." 1>&2
+    $ECHO "See the libtool documentation for more information." 1>&2
+    exit 1
+  fi
+fi

laldetchar/debian/control

+Source: laldetchar
+Section: science
+Priority: optional
+Maintainer: Steffen Grunewald <steffen.grunewald@aei.mpg.de>
+Uploaders: Adam Mercer <adam.mercer@ligo.org>, GitLab <gitlab@git.ligo.org>
+Build-Depends: debhelper (>= 9),
+  dh-python,
+  help2man,
+  libglib2.0-dev (>= 2.14),
+  libgsl-dev | libgsl0-dev (>= 1.9),
+  liboctave-dev,
+  pkg-config,
+  python-all-dev,
+  swig (>= 3.0.7),
+  lal-dev (>= 6.18.0~),
+  lal-octave (>= 6.18.0~),
+  python-lal (>= 6.18.0~),
+  lalmetaio-dev (>= 1.3.1~),
+  lalmetaio-octave (>= 1.3.1~),
+  python-lalmetaio (>= 1.3.1~),
+  lalsimulation-dev (>= 1.7.0~),
+  lalsimulation-octave (>= 1.7.0~),
+  python-lalsimulation (>= 1.7.0~),
+  lalburst-dev (>= 1.4.4~),
+  lalburst-octave (>= 1.4.4~),
+  python-lalburst (>= 1.4.4~)
+X-Python-Version: >= 2.7
+X-Python3-Version: <= 3.0
+Standards-Version: 3.9.8
+
+Package: laldetchar
+Architecture: any
+Depends: ${misc:Depends},
+  ${shlibs:Depends},
+  libglib2.0-0,
+  lal (>= 6.18.0~),
+  lalmetaio (>= 1.3.1~),
+  lalsimulation (>= 1.7.0~),
+  lalburst (>= 1.4.4~)
+Description: LSC Algorithm Library Detector Characterisation
+ The LSC Algorithm Detector Characterisation Library for gravitational
+ wave data analysis. This package contains the shared-object libraries
+ needed to run applications that use the LALDetChar library.
+
+Package: laldetchar-dev
+Section: libdevel
+Architecture: any
+Depends: ${misc:Depends},
+  ${shlibs:Depends},
+  libglib2.0-dev (>= 2.14),
+  libgsl-dev | libgsl0-dev (>= 1.9),
+  lal-dev (>= 6.18.0~),
+  lalmetaio-dev (>= 1.3.1~),
+  lalsimulation-dev (>= 1.7.0~),
+  lalburst-dev (>= 1.4.4~),
+  laldetchar (= ${binary:Version})
+Description: LSC Algorithm Library Detector Characterisation Developers
+ The LSC Algorithm Detector Characterisation Library for gravitational
+ wave data analysis. This package contains files needed build
+ applications that use the LALDetChar library.
+
+Package: laldetchar-python
+Depends: python-laldetchar, ${misc:Depends}
+Architecture: all
+Priority: optional
+Section: oldlibs
+Description: transitional package
+ laldetchar-python was renamed python-laldetchar,
+ this is a transitional package, it can safely be removed.
+
+Package: python-laldetchar
+Replaces: laldetchar-python (<< 0.3.5-1~)
+Breaks: laldetchar-python (<< 0.3.5-1~)
+Section: python
+Architecture: any
+Depends: ${misc:Depends},
+  ${python:Depends},
+  ${shlibs:Depends},
+  python-lal (>= 6.18.0~),
+  python-lalmetaio (>= 1.3.1~),
+  python-lalsimulation (>= 1.7.0~),
+  python-lalburst (>= 1.4.4~),
+  laldetchar (= ${binary:Version})
+Description: Python bindings for LALDetChar
+ The LSC Algorithm Detchar Library for gravitational wave data analysis.
+ This package contains Python bindings for the LAL Detchar library.
+
+Package: laldetchar-octave
+Architecture: any
+Depends: ${misc:Depends},
+  ${shlibs:Depends},
+  octave,
+  lal-octave (>= 6.18.0~),
+  python-lalmetaio (>= 1.3.1~),
+  lalsimulation-octave (>= 1.7.0~),
+  python-lalburst (>= 1.4.4~),
+  laldetchar (= ${binary:Version})
+Description: Octave bindings for LALDetChar
+ The LSC Algorithm Detchar Library for gravitational wave data analysis.
+ This package contains Octave bindings for the LAL Detchar library.

laldetchar/include/lal/LALDetChar.h

+/home/bedelman/src/lalsuite/laldetchar/src/LALDetChar.h
\ No newline at end of file

laldetchar/include/lal/LALDetCharConfig.h

+/home/bedelman/src/lalsuite/laldetchar/src/LALDetCharConfig.h
\ No newline at end of file

laldetchar/include/lal/LALDetCharGlib.h

+/home/bedelman/src/lalsuite/laldetchar/src/LALDetCharGlib.h
\ No newline at end of file

laldetchar/include/lal/LALDetCharGlibTypes.h

+/home/bedelman/src/lalsuite/laldetchar/src/LALDetCharGlibTypes.h
\ No newline at end of file

laldetchar/include/lal/LALDetCharHveto.h

+/home/bedelman/src/lalsuite/laldetchar/src/LALDetCharHveto.h
\ No newline at end of file

laldetchar/include/lal/LALDetCharHvetoUtils.h

+/home/bedelman/src/lalsuite/laldetchar/src/LALDetCharHvetoUtils.h
\ No newline at end of file

laldetchar/include/lal/LALDetCharRange.h

+/home/bedelman/src/lalsuite/laldetchar/src/LALDetCharRange.h
\ No newline at end of file

laldetchar/include/lal/LALDetCharVCSInfo.h

+/home/bedelman/src/lalsuite/laldetchar/src/LALDetCharVCSInfo.h
\ No newline at end of file