migrate NLTides branch

.gitlab-ci.yml

-image: docker:latest
-
-variables:
-  DOCKER_DRIVER: overlay
-#  GIT_DEPTH: 1
-  COMMIT: $CI_REGISTRY_IMAGE:$CI_COMMIT_SHA
-  BRANCH: $CI_REGISTRY_IMAGE:$CI_COMMIT_REF_NAME
-  TAG: $CI_REGISTRY_IMAGE:$CI_COMMIT_TAG
-  LAL_DIR: $CI_PROJECT_DIR/opt/lalsuite
-
-stages:
-  - level0
-  - level1
-  - level2
-  - level3
-  - level4
-  - nightly
-  - container
-  - tag
-
-before_script:
-  - ulimit -S -c 0
-  - export VERBOSE="true"
-  - export PATH=/usr/lib/ccache:$PATH
-  - export CCACHE_DIR=${PWD}/ccache
-  - export PKG_CONFIG_PATH=${LAL_DIR}/lib/pkgconfig
-  - mkdir -p opt/lalsuite
-
-cache:
-  key: $CI_JOB_NAME
-  paths:
-    - ccache
-
-level0:lal:
-  image: ligo/lalsuite-dev:jessie
-  stage: level0
-  script:
-    - cd lal
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lal-*.tar.xz
-    - cd lal-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  only:
-    - pushes
-
-level1:lalframe:
-  image: ligo/lalsuite-dev:jessie
-  stage: level1
-  script:
-    - cd lalframe
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lalframe-*.tar.xz
-    - cd lalframe-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level0:lal
-  only:
-    - pushes
-
-level1:lalmetaio:
-  image: ligo/lalsuite-dev:jessie
-  stage: level1
-  script:
-    - cd lalmetaio
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lalmetaio-*.tar.xz
-    - cd lalmetaio-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level0:lal
-  only:
-    - pushes
-
-level1:lalsimulation:
-  image: ligo/lalsuite-dev:jessie
-  stage: level1
-  script:
-    - cd lalsimulation
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lalsimulation-*.tar.xz
-    - cd lalsimulation-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level0:lal
-  only:
-    - pushes
-
-level1:lalxml:
-  image: ligo/lalsuite-dev:jessie
-  stage: level1
-  script:
-    - cd lalxml
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lalxml-*.tar.xz
-    - cd lalxml-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level0:lal
-  only:
-    - pushes
-
-level2:lalburst:
-  image: ligo/lalsuite-dev:jessie
-  stage: level2
-  script:
-    - cd lalburst
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lalburst-*.tar.xz
-    - cd lalburst-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level1:lalmetaio
-    - level1:lalsimulation
-  only:
-    - pushes
-
-level2:lalinspiral:
-  image: ligo/lalsuite-dev:jessie
-  stage: level2
-  script:
-    - cd lalinspiral
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lalinspiral-*.tar.xz
-    - cd lalinspiral-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level1:lalframe
-    - level1:lalmetaio
-    - level1:lalsimulation
-  only:
-    - pushes
-
-level2:lalpulsar:
-  image: ligo/lalsuite-dev:jessie
-  stage: level2
-  script:
-    - cd lalpulsar
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lalpulsar-*.tar.xz
-    - cd lalpulsar-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level1:lalxml
-  only:
-    - pushes
-
-level2:lalstochastic:
-  image: ligo/lalsuite-dev:jessie
-  stage: level2
-  script:
-    - cd lalstochastic
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lalstochastic-*.tar.xz
-    - cd lalstochastic-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level1:lalmetaio
-  only:
-    - pushes
-
-level3:laldetchar:
-  image: ligo/lalsuite-dev:jessie
-  stage: level3
-  script:
-    - cd laldetchar
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf laldetchar-*.tar.xz
-    - cd laldetchar-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level2:lalburst
-  only:
-    - pushes
-
-level3:lalinference:
-  image: ligo/lalsuite-dev:jessie
-  stage: level3
-  script:
-    - cd lalinference
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lalinference-*.tar.xz
-    - cd lalinference-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level2:lalburst
-    - level2:lalinspiral
-    - level2:lalpulsar
-  only:
-    - pushes
-
-level4:lalapps:
-  image: ligo/lalsuite-dev:jessie
-  stage: level4
-  script:
-    - cd lalapps
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make dist
-    - tar xf lalapps-*.tar.xz
-    - cd lalapps-*
-    - ./configure --enable-swig --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 V=1
-    - make -j4 V=1 check
-    - make -j4 install
-    - make -j4 install-html
-  artifacts:
-    expire_in: 3h
-    paths:
-      - opt/lalsuite
-  dependencies:
-    - level2:lalstochastic
-    - level3:laldetchar
-    - level3:lalinference
-  only:
-    - pushes
-
-nightly:top-level:el7:
-  image: ligo/lalsuite-dev:el7
-  stage: nightly
-  script:
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen
-    - make -j4 distcheck
-  only:
-    - schedules
-    - web
-
-nightly:top-level:jessie:
-  image: ligo/lalsuite-dev:jessie
-  stage: nightly
-  script:
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen
-    - make -j4 distcheck
-  only:
-    - schedules
-    - web
-
-nightly:top-level:stretch:
-  image: ligo/lalsuite-dev:stretch
-  stage: nightly
-  script:
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen
-    - make -j4 distcheck
-  only:
-    - schedules
-    - web
-
-nightly:top-level:trusty:
-  image: skymoo/ligo-lalsuite-dev:trusty
-  stage: nightly
-  script:
-    - ./00boot
-    - ./configure --disable-swig --enable-doxygen
-    - make -j4 distcheck
-  only:
-    - schedules
-    - web
-
-nightly:top-level:xenial:
-  image: skymoo/ligo-lalsuite-dev:xenial
-  stage: nightly
-  script:
-    - ./00boot
-    - ./configure --disable-swig --enable-doxygen
-    - make -j4 distcheck
-  only:
-    - schedules
-    - web
-
-nightly:top-level:buster:
-  image: skymoo/ligo-lalsuite-dev:buster
-  stage: nightly
-  script:
-    - ./00boot
-    - ./configure --enable-swig-python --enable-doxygen
-    - make -j4 distcheck
-  only:
-    - schedules
-    - web
-  allow_failure: true
-
-nightly:mpi:jessie:
-  image: ligo/lalsuite-dev:jessie
-  stage: nightly
-  script:
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --enable-mpi
-    - make -j4 distcheck
-  only:
-    - schedules
-    - web
-
-nightly:openmp:jessie:
-  image: ligo/lalsuite-dev:jessie
-  stage: nightly
-  script:
-    - ./00boot
-    - ./configure --enable-swig --enable-doxygen --enable-openmp
-    - make -j4 distcheck
-  only:
-    - schedules
-    - web
-
-nightly:python3:stretch:
-  image: ligo/lalsuite-dev:stretch
-  stage: nightly
-  script:
-    - ./00boot
-    - PYTHON=python3 ./configure --enable-swig --enable-doxygen
-    - make -j4 distcheck
-  only:
-    - schedules
-    - web
-
-pages:
-  image: ligo/lalsuite-dev:stretch
-  stage: nightly
-  script:
-    - ./00boot
-    - ./configure --enable-doxygen --prefix=${LAL_DIR}
-    - make -j4 install-html
-    - cp -r ${LAL_DIR}/share/doc public/
-  artifacts:
-    paths:
-      - public
-  only:
-    - master@adam-mercer/lalsuite-git-lfs
-    - schedules
-    - web
-  except:
-    - pushes
-
-dockerize:
-  stage: container
-  before_script: []
-  script:
-    - docker login -u gitlab-ci-token -p $CI_JOB_TOKEN $CI_REGISTRY
-    - docker build --pull -t $COMMIT -t $BRANCH .
-    - docker push $COMMIT
-  dependencies:
-    - level4:lalapps
-  only:
-    - pushes
-
-tagged:
-  stage: tag
-  only:
-    - tags
-  before_script: []
-  script:
-    - docker tag $COMMIT $TAG
-    - docker push $TAG

Dockerfile

-FROM ligo/lalsuite-runtime:jessie
-COPY /opt/lalsuite /opt/lalsuite
-ENV LD_LIBRARY_PATH="/opt/lalsuite/lib" \
-    OCTAVE_PATH="/opt/lalsuite/lib/x86_64-linux-gnu/octave/3.8.2/site/oct/x86_64-pc-linux-gnu" \
-    PATH="/opt/lalsuite/bin:${PATH}" \
-    PKG_CONFIG_PATH="/opt/lalsuite/lib/pkgconfig" \
-    PYTHONPATH="/opt/lalsuite/lib/python2.7/site-packages" \

README.md

-# LALSuite
-
-This is the main LALSuite development repository, past development is
-captured in the repository below:
-
-https://git.ligo.org/lscsoft/lalsuite-archive
-
-This new repository utilizes [git-lfs](https://wiki.ligo.org/DASWG/GitLFS#Install_the_git_LFS_client) for the managament of large files and as such `git-lfs` needs to be installed and configured to correctly clone this repository. After installing `git-lfs` it can be configured using:
-
-```
-$ git lfs install
-```
-
-This only needs to be done once for each machine you access the repository. It can then be cloned using:
-
-```
-$ git clone git@git.ligo.org:lscsoft/lalsuite.git
-```

configure.ac

 AC_PREREQ([2.63])
-AC_INIT([LALSuite],[6.48.1],[lal-discuss@ligo.org])
+AC_INIT([LALSuite],[6.45.1],[lal-discuss@ligo.org])
 AC_CONFIG_SRCDIR([configure.ac])
 AC_CONFIG_AUX_DIR([gnuscripts])
 AC_CONFIG_MACRO_DIR([gnuscripts])

gnuscripts/lalsuite_build.m4

 # -*- mode: autoconf; -*-
 # lalsuite_build.m4 - top level build macros
 #
-# serial 141
+# serial 135
 
 # restrict which LALSUITE_... patterns can appearing in output (./configure);
 # useful for debugging problems with unexpanded LALSUITE_... Autoconf macros
@@ -44,11 +44,6 @@ AC_DEFUN([AC_OUTPUT],[
     AC_SUBST(AM_[]uvar,"${AM_[]uvar} ${sys_[]uvar}")
     uvar="${uvar_prefix[]uvar}"
   ])
-  # append extra values for user variables to be added after configuration
-  m4_foreach_w([uvar],uvar_list,[
-    AC_ARG_VAR([POSTCONFIG_]uvar,[Extra ]uvar[ to be added after configuration])
-    uvar="${uvar} ${POSTCONFIG_[]uvar}"
-  ])
   # call original AC_OUTPUT
   lalsuite_AC_OUTPUT
 ])
@@ -504,32 +499,24 @@ AC_DEFUN([LALSUITE_MULTILIB_LIBTOOL_HACK],[
 AC_DEFUN([LALSUITE_DISTCHECK_CONFIGURE_FLAGS],[
   # $0: store configure flags for 'make distcheck'
   DISTCHECK_CONFIGURE_FLAGS=
-  eval set x "${ac_configure_args}"
-  shift
-  for arg
-  do
-    AS_CASE(["${arg}"],
-      [--enable-*|--disable-*],[
+  for arg in ${ac_configure_args}; do
+    case ${arg} in
+      (\'--enable-*\'|\'--disable-*\')
         # save any --enable/--disable arguments
-        DISTCHECK_CONFIGURE_FLAGS="${DISTCHECK_CONFIGURE_FLAGS} '${arg}'"
-      ],
-      [--with-*|--without-*],[
+        DISTCHECK_CONFIGURE_FLAGS="${DISTCHECK_CONFIGURE_FLAGS} ${arg}";;
+      (\'--with-*\'|\'--without-*\')
         # save any --with/--without arguments
-        DISTCHECK_CONFIGURE_FLAGS="${DISTCHECK_CONFIGURE_FLAGS} '${arg}'"
-      ],
-      [--*],[
+        DISTCHECK_CONFIGURE_FLAGS="${DISTCHECK_CONFIGURE_FLAGS} ${arg}";;
+      (\'--*\')
         # skip all other ./configure arguments
-        :
-      ],
-      [DISTCHECK_CONFIGURE_FLAGS=*],[
+        : ;;
+      (\'DISTCHECK_CONFIGURE_FLAGS=*\')
         # append value of DISTCHECK_CONFIGURE_FLAGS
-        DISTCHECK_CONFIGURE_FLAGS="${DISTCHECK_CONFIGURE_FLAGS} '`expr "X${arg}" : "XDISTCHECK_CONFIGURE_FLAGS=\(.*\)"`'"
-      ],
-      [*=*],[
+        DISTCHECK_CONFIGURE_FLAGS="${DISTCHECK_CONFIGURE_FLAGS} "`expr "X${arg}" : "X'DISTCHECK_CONFIGURE_FLAGS=\(.*\)'"`;;
+      (\'*=*\')
         # save any environment variables given to ./configure
-        DISTCHECK_CONFIGURE_FLAGS="${DISTCHECK_CONFIGURE_FLAGS} '${arg}'"
-      ]
-    )
+        DISTCHECK_CONFIGURE_FLAGS="${DISTCHECK_CONFIGURE_FLAGS} ${arg}";;
+    esac
   done
   AC_SUBST(DISTCHECK_CONFIGURE_FLAGS)
   # end $0
@@ -704,24 +691,10 @@ AC_DEFUN([LALSUITE_CHECK_LIBRARY_FOR_SUPPORT],[
   save_CPPFLAGS="${CPPFLAGS}"
   LALSUITE_CLEAR_UVARS
   CPPFLAGS="${save_CPPFLAGS}"
-  AS_IF([test "x${LALSUITE_BUILD}" = xtrue],[
-    for arg in ${lalsuite_libs}; do
-      AS_CASE([${arg}],
-        [lalsupport],[:],[
-          CPPFLAGS="-I${ac_pwd}/../${arg}/src ${CPPFLAGS}"
-        ]
-      )
-    done
-    CPPFLAGS="-DLALSUITE_BUILD ${CPPFLAGS}"
-  ])
   AC_MSG_CHECKING([whether $1 has been compiled with $2 support])
   AC_COMPILE_IFELSE([
     AC_LANG_SOURCE([[
-#ifdef LALSUITE_BUILD
-#include "$1Config.h"
-#else
 #include <lal/$1Config.h>
-#endif
 #ifndef ]uppercase[_$2_ENABLED
 #error ]uppercase[_$2_ENABLED is not defined
 #endif
@@ -972,59 +945,12 @@ AC_DEFUN([LALSUITE_ENABLE_BOINC],[
 ])
 
 AC_DEFUN([LALSUITE_CHECK_BOINC],[
-  # $0: check for BOINC, and modify compiler for lal library checks
-  AS_IF([test "${boinc}" = "true"],[
-
-    # do compilation checks with c++
-    AC_LANG_PUSH([C++])
-
-    # check for BOINC libraries
-    AC_SUBST([BOINC_CFLAGS],[""])
-    AC_SUBST([BOINC_LIBS],["-lboinc_api -lboinc"])
-    LALSUITE_ADD_FLAGS([C],[${BOINC_CFLAGS}],[${BOINC_LIBS}])
-    AC_CHECK_LIB([boinc],[boinc_fopen],[:],[AC_MSG_ERROR([could not find the boinc library])])
-    AC_CHECK_LIB([boinc_api],[boinc_finish],[:],[AC_MSG_ERROR([could not find the boinc_api library])])
-
-    # check for BOINC headers
-    AC_CHECK_HEADERS([boinc/boinc_api.h],[:],[AC_MSG_ERROR([could not find the boinc_api.h header])])
-
-  ])
-  # end $0
-])
-
-AC_DEFUN([LALSUITE_END_CHECK_BOINC],[
-  # $0: finish BOINC checks, and restore compiler after lal library checks
-  m4_pushdef([lowercase],m4_translit(AC_PACKAGE_NAME, [A-Z], [a-z]))
-  AC_REQUIRE([LALSUITE_CHECK_BOINC])
+  # $0: check for BOINC support
   AS_IF([test "${boinc}" = "true"],[
-
-    m4_if(lowercase,[lal],[
-
-      # if LAL, define macro to indicate BOINC support
-      AC_DEFINE([LAL_BOINC_ENABLED],[1],[Define if using BOINC library])
-
-    ],[
-
-      # if not LAL, check LAL was compiled with BOINC support
-      LALSUITE_CHECK_LIBRARY_FOR_SUPPORT([LAL],[BOINC],[:],[
-        AC_MSG_ERROR([BOINC enabled but LAL not compiled with BOINC support])
-      ])
-
+    LALSUITE_CHECK_LIBRARY_FOR_SUPPORT([LAL],[BOINC],[:],[
+      AC_MSG_ERROR([BOINC was enabled but LAL was not compiler with BOINC support])
     ])
-
-    # go back to c
-    AC_LANG_POP([C++])
-
-    # force automake to use c++ compiler for linking
-    AC_MSG_WARN([using C++ compiler for linking (forced by BOINC)])
-    AC_SUBST([CCLD],['$(CXX)'])
-    AC_SUBST([am__v_CCLD_0],['@echo "  CXXLD(B)" $][@;'])
-
-  ],[
-    AC_SUBST([CCLD],['$(CC)'])