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lscsoft
bilby
Commits
0cd77bb1
Commit
0cd77bb1
authored
May 16, 2018
by
Moritz Huebner
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Moritz Huebner: Removed the property and created a function to initialise the result
parent
bb91eb56
Pipeline
#19341
passed with stages
in 7 minutes and 17 seconds
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1
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1 changed file
with
17 additions
and
15 deletions
+17
-15
tupak/sampler.py
tupak/sampler.py
+17
-15
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tupak/sampler.py
View file @
0cd77bb1
...
...
@@ -59,18 +59,7 @@ class Sampler(object):
if
os
.
path
.
isdir
(
outdir
)
is
False
:
os
.
makedirs
(
outdir
)
@
property
def
result
(
self
):
self
.
__result
=
Result
()
self
.
__result
.
search_parameter_keys
=
self
.
__search_parameter_keys
self
.
__result
.
fixed_parameter_keys
=
self
.
__fixed_parameter_keys
self
.
__result
.
parameter_labels
=
[
self
.
priors
[
k
].
latex_label
for
k
in
self
.
__search_parameter_keys
]
self
.
__result
.
label
=
self
.
label
self
.
__result
.
outdir
=
self
.
outdir
self
.
__result
.
priors
=
self
.
priors
self
.
__result
.
kwargs
=
self
.
kwargs
self
.
result
=
self
.
initialise_result
()
@
property
def
search_parameter_keys
(
self
):
...
...
@@ -117,7 +106,7 @@ class Sampler(object):
if
user_input
not
in
args
:
logging
.
warning
(
"Supplied argument '{}' not an argument of '{}', removing."
.
format
(
user_input
,
self
.
external_sampler_function
))
.
format
(
user_input
,
self
.
external_sampler_function
))
bad_keys
.
append
(
user_input
)
for
key
in
bad_keys
:
self
.
kwargs
.
pop
(
key
)
...
...
@@ -140,6 +129,19 @@ class Sampler(object):
for
key
in
self
.
__fixed_parameter_keys
:
logging
.
info
(
' {} = {}'
.
format
(
key
,
self
.
priors
[
key
].
peak
))
def
initialise_result
(
self
):
result
=
Result
()
result
.
search_parameter_keys
=
self
.
__search_parameter_keys
result
.
fixed_parameter_keys
=
self
.
__fixed_parameter_keys
result
.
parameter_labels
=
[
self
.
priors
[
k
].
latex_label
for
k
in
self
.
__search_parameter_keys
]
result
.
label
=
self
.
label
result
.
outdir
=
self
.
outdir
result
.
priors
=
self
.
priors
result
.
kwargs
=
self
.
kwargs
return
result
def
verify_parameters
(
self
):
required_keys
=
self
.
priors
unmatched_keys
=
[
r
for
r
in
required_keys
if
r
not
in
self
.
likelihood
.
parameters
]
...
...
@@ -153,7 +155,7 @@ class Sampler(object):
def
log_prior
(
self
,
theta
):
return
np
.
sum
(
[
np
.
log
(
self
.
priors
[
key
].
prob
(
t
))
for
key
,
t
in
zip
(
self
.
__search_parameter_keys
,
theta
)])
zip
(
self
.
__search_parameter_keys
,
theta
)])
def
log_likelihood
(
self
,
theta
):
for
i
,
k
in
enumerate
(
self
.
__search_parameter_keys
):
...
...
@@ -174,7 +176,7 @@ class Sampler(object):
"""
draw
=
np
.
array
([
self
.
priors
[
key
].
sample
()
for
key
in
self
.
__search_parameter_keys
])
for
key
in
self
.
__search_parameter_keys
])
if
np
.
isinf
(
self
.
log_likelihood
(
draw
)):
logging
.
info
(
'Prior draw {} has inf likelihood'
.
format
(
draw
))
if
np
.
isinf
(
self
.
log_prior
(
draw
)):
...
...
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