From 119dd1cc74a4d1b7755afc9e8ced2342daa524ef Mon Sep 17 00:00:00 2001
From: Colm Talbot <colm.talbot@ligo.org>
Date: Tue, 24 Sep 2019 22:28:43 -0500
Subject: [PATCH] add live when using checkpointing to fix n effective
calulation in dynesty
---
bilby/core/sampler/dynesty.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/bilby/core/sampler/dynesty.py b/bilby/core/sampler/dynesty.py
index 87540c340..efb25f260 100644
--- a/bilby/core/sampler/dynesty.py
+++ b/bilby/core/sampler/dynesty.py
@@ -295,7 +295,7 @@ class Dynesty(NestedSampler):
old_ncall = self.sampler.ncall
sampler_kwargs = self.sampler_function_kwargs.copy()
sampler_kwargs['maxcall'] = self.n_check_point
- sampler_kwargs['add_live'] = False
+ sampler_kwargs['add_live'] = True
self.start_time = datetime.datetime.now()
while True:
sampler_kwargs['maxcall'] += self.n_check_point
@@ -304,6 +304,7 @@ class Dynesty(NestedSampler):
break
old_ncall = self.sampler.ncall
+ self.sampler._remove_live_points()
self.write_current_state()
sampler_kwargs['add_live'] = True
--
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