diff --git a/bilby/core/sampler/emcee.py b/bilby/core/sampler/emcee.py index 33f21fcf987f20bf278b07287a7cd2f5a3696225..17867251d37165ab8a8495c123b930b64ae2a123 100644 --- a/bilby/core/sampler/emcee.py +++ b/bilby/core/sampler/emcee.py @@ -3,6 +3,7 @@ from __future__ import absolute_import, print_function from collections import namedtuple import os import signal +import shutil from shutil import copyfile import sys @@ -308,7 +309,7 @@ class Emcee(MCMCSampler): with open(temp_chain_file, "a") as ff: for ii, point in enumerate(points): ff.write(self.checkpoint_info.chain_template.format(ii, *point)) - os.rename(temp_chain_file, chain_file) + shutil.move(temp_chain_file, chain_file) @property def _previous_iterations(self): diff --git a/bilby/core/utils.py b/bilby/core/utils.py index 345831f685f3d6058cdf67c9300bdc10de03c689..f007416b27e8a5923a379a9528b3c3c0c5188fd1 100644 --- a/bilby/core/utils.py +++ b/bilby/core/utils.py @@ -3,6 +3,7 @@ from __future__ import division from distutils.spawn import find_executable import logging import os +import shutil from math import fmod import argparse import traceback @@ -1065,7 +1066,7 @@ def move_old_file(filename, overwrite=False): logger.debug( 'Renaming existing file {} to {}.old'.format(filename, filename)) - os.rename(filename, filename + '.old') + shutil.move(filename, filename + '.old') logger.debug("Saving result to {}".format(filename)) @@ -1178,7 +1179,7 @@ def safe_file_dump(data, filename, module): temp_filename = filename + ".temp" with open(temp_filename, "wb") as file: module.dump(data, file) - os.rename(temp_filename, filename) + shutil.move(temp_filename, filename) def latex_plot_format(func):