From b507d8a29e7029b1ba166dd744f365608166ce65 Mon Sep 17 00:00:00 2001
From: Moritz <email@moritz-huebner.de>
Date: Mon, 29 Apr 2019 14:07:19 +1000
Subject: [PATCH] Made saving nested samples work
---
bilby/core/sampler/cpnest.py | 13 +++++++------
1 file changed, 7 insertions(+), 6 deletions(-)
diff --git a/bilby/core/sampler/cpnest.py b/bilby/core/sampler/cpnest.py
index 692980876..2f11d94ff 100644
--- a/bilby/core/sampler/cpnest.py
+++ b/bilby/core/sampler/cpnest.py
@@ -101,12 +101,13 @@ class Cpnest(NestedSampler):
out.plot()
self.result.posterior = DataFrame(out.posterior_samples)
- self.result.nested_samples = DataFrame(out.get_nested_samples(filename=None))
- self.result.nested_samples.rename(columns=dict(logL='log_likelihood'))
- self.result.nested_samples['weights'] = np.exp(compute_weights(self.result.nested_samples['log_likelihood'],
- out.NS.state.nlive)[1])
- self.result.posterior.rename(columns=dict(
- logL='log_likelihood', logPrior='log_prior'), inplace=True)
+ self.result.nested_samples = DataFrame(out.get_nested_samples(filename=''))
+ self.result.nested_samples.rename(columns=dict(logL='log_likelihood'), inplace=True)
+ self.result.posterior.rename(columns=dict(logL='log_likelihood', logPrior='log_prior'),
+ inplace=True)
+ _, log_weights = compute_weights(np.array(self.result.nested_samples.log_likelihood),
+ np.array(out.NS.state.nlive))
+ self.result.nested_samples.weights = np.exp(log_weights)
self.result.log_evidence = out.NS.state.logZ
self.result.log_evidence_err = np.sqrt(out.NS.state.info / out.NS.state.nlive)
return self.result
--
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