From ebe10697de6bbfb3a32cb84a0bc0ef346a3a6ff3 Mon Sep 17 00:00:00 2001
From: Colm Talbot <colm.talbot@ligo.org>
Date: Tue, 5 Sep 2023 16:29:11 +0000
Subject: [PATCH] Resolve "Cannot save editable installs with hdf5 without
conda"
---
bilby/core/utils/io.py | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/bilby/core/utils/io.py b/bilby/core/utils/io.py
index c55837bfd..01026a3db 100644
--- a/bilby/core/utils/io.py
+++ b/bilby/core/utils/io.py
@@ -278,19 +278,22 @@ def encode_for_hdf5(key, item):
elif item is None:
output = "__none__"
elif isinstance(item, list):
+ item_array = np.array(item)
if len(item) == 0:
output = item
- elif isinstance(item[0], (str, bytes)) or item[0] is None:
+ elif np.issubdtype(item_array.dtype, np.number):
+ output = np.array(item)
+ elif issubclass(item_array.dtype.type, str) or item[0] is None:
output = list()
for value in item:
if isinstance(value, str):
output.append(value.encode("utf-8"))
elif isinstance(value, bytes):
output.append(value)
- else:
+ elif value is None:
output.append(b"__none__")
- elif isinstance(item[0], (int, float, complex)):
- output = np.array(item)
+ else:
+ output.append(str(value).encode("utf-8"))
else:
raise ValueError(f'Cannot save {key}: {type(item)} type')
elif isinstance(item, PriorDict):
--
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