pip install error because of tqdm + pesummary
On trying to install bilby_pipe
from source, i get the error:
error: tqdm 4.61.1 is installed but tqdm<=4.54.1,>=4.44.0 is required by {'pesummary'}
Full log
Running Python version 3.6.8
Confirmed Python version 3.6.0 or above
parsed git version info as: '1.0.4: (CLEAN) fbcd3c1 2021-05-27 16:50:32 +0000'
created bilby_pipe/.version
running develop
running egg_info
creating bilby_pipe.egg-info
writing bilby_pipe.egg-info/PKG-INFO
writing dependency_links to bilby_pipe.egg-info/dependency_links.txt
writing entry points to bilby_pipe.egg-info/entry_points.txt
writing requirements to bilby_pipe.egg-info/requires.txt
writing top-level names to bilby_pipe.egg-info/top_level.txt
writing manifest file 'bilby_pipe.egg-info/SOURCES.txt'
reading manifest file 'bilby_pipe.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'bilby_pipe.egg-info/SOURCES.txt'
running build_ext
Creating /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/bilby-pipe.egg-link (link to .)
Adding bilby-pipe 1.0.4 to easy-install.pth file
Installing bilby_pipe script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_analysis script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_create_injection_file script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_generation script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_gracedb script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_plot script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_plot_calibration script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_plot_corner script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_plot_marginal script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_plot_skymap script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_plot_waveform script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_pp_test script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_review script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_write_default_ini script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing bilby_pipe_xml_converter script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installed /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/packages/bilby_pipe
Processing dependencies for bilby-pipe==1.0.4
Searching for jinja2
Reading https://pypi.org/simple/jinja2/
Downloading https://files.pythonhosted.org/packages/80/21/ae597efc7ed8caaa43fb35062288baaf99a7d43ff0cf66452ddf47604ee6/Jinja2-3.0.1-py3-none-any.whl#sha256=1f06f2da51e7b56b8f238affdd6b4e2c61e39598a378cc49345bc1bd42a978a4
Best match: Jinja2 3.0.1
Processing Jinja2-3.0.1-py3-none-any.whl
Installing Jinja2-3.0.1-py3-none-any.whl to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages
writing requirements to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/Jinja2-3.0.1-py3.6.egg/EGG-INFO/requires.txt
Adding Jinja2 3.0.1 to easy-install.pth file
Installed /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/Jinja2-3.0.1-py3.6.egg
Searching for pesummary>=0.2.4
Reading https://pypi.org/simple/pesummary/
Downloading https://files.pythonhosted.org/packages/3b/00/642685ca57283813d742cd67cb9f7925e9e3eae97dfdcf73a37ab3001c65/pesummary-0.12.1-py3-none-any.whl#sha256=68771f11e4a7c0b7e1d7a98b4f02ad220739ddbc3fde99d5151a1ca87a31f97e
Best match: pesummary 0.12.1
Processing pesummary-0.12.1-py3-none-any.whl
Installing pesummary-0.12.1-py3-none-any.whl to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages
writing requirements to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/pesummary-0.12.1-py3.6.egg/EGG-INFO/requires.txt
Adding pesummary 0.12.1 to easy-install.pth file
Installing summaryclassification script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summaryclean script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarycombine script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarycombine_posteriors script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarycompare script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarydetchar script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summaryextract script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarygracedb script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summaryjscompare script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarymodify script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarypages script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarypageslw script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarypipe script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summaryplots script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarypublication script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summaryrecreate script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summaryreview script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarytest script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summarytgr script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing summaryversion script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installed /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/pesummary-0.12.1-py3.6.egg
Searching for gwosc
Reading https://pypi.org/simple/gwosc/
Downloading https://files.pythonhosted.org/packages/2d/6f/ce94cc0627a9de31be4573f317eb2793cb58225a5253c0d2883e6c512b90/gwosc-0.5.8-py3-none-any.whl#sha256=b7ba2a02929c5952ce2edd8e2729b4cc133511a2b1762f9916b50ee5302f7ac6
Best match: gwosc 0.5.8
Processing gwosc-0.5.8-py3-none-any.whl
Installing gwosc-0.5.8-py3-none-any.whl to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages
writing requirements to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/gwosc-0.5.8-py3.6.egg/EGG-INFO/requires.txt
Adding gwosc 0.5.8 to easy-install.pth file
Installed /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/gwosc-0.5.8-py3.6.egg
Searching for gwpy
Reading https://pypi.org/simple/gwpy/
Downloading https://files.pythonhosted.org/packages/5d/cc/9443f42be355cfdc4c84eafe8163e7e2ffd615e1a663dc0dd0f9d1e383ee/gwpy-2.0.4-py2.py3-none-any.whl#sha256=b8a9af269ac2801bdb5881a29942dbff389d97a53d72db9937c0ece08577d848
Best match: gwpy 2.0.4
Processing gwpy-2.0.4-py2.py3-none-any.whl
Installing gwpy-2.0.4-py2.py3-none-any.whl to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages
writing requirements to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/gwpy-2.0.4-py3.6.egg/EGG-INFO/requires.txt
Adding gwpy 2.0.4 to easy-install.pth file
Installing gwpy-plot script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installed /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/gwpy-2.0.4-py3.6.egg
Searching for ligo-gracedb
Reading https://pypi.org/simple/ligo-gracedb/
Downloading https://files.pythonhosted.org/packages/20/d0/b852062aa2f503a8276c28c04642578a0f09671d46306982fd02d8e2fa9f/ligo-gracedb-2.7.6.tar.gz#sha256=b9932a739e5e7634471ab99d21bd24e9e1c94d9fc62cd74b6cf0fa7e4f11f936
Best match: ligo-gracedb 2.7.6
Processing ligo-gracedb-2.7.6.tar.gz
Writing /local/avi.vajpeyi/easy_install-5lo3kh2i/ligo-gracedb-2.7.6/setup.cfg
Running ligo-gracedb-2.7.6/setup.py -q bdist_egg --dist-dir /local/avi.vajpeyi/easy_install-5lo3kh2i/ligo-gracedb-2.7.6/egg-dist-tmp-4gyfcvux
zip_safe flag not set; analyzing archive contents...
ligo.gracedb.test.integration.__pycache__.conftest.cpython-36: module references __file__
ligo.gracedb.test.integration.__pycache__.test_cli.cpython-36: module references __file__
creating /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/ligo_gracedb-2.7.6-py3.6.egg
Extracting ligo_gracedb-2.7.6-py3.6.egg to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages
Adding ligo-gracedb 2.7.6 to easy-install.pth file
Installing gracedb script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installing gracedb_legacy script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installed /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/ligo_gracedb-2.7.6-py3.6.egg
Searching for configargparse
Reading https://pypi.org/simple/configargparse/
Downloading https://files.pythonhosted.org/packages/6c/47/9afae827a2159bb676fdc1d65c36539968c52031584f443f1938b939f23b/ConfigArgParse-1.5-py3-none-any.whl#sha256=afbd2823d29ed30cbd53513ea8290938e3dc3136ad9cfffdc684c9225c19adc5
Best match: ConfigArgParse 1.5
Processing ConfigArgParse-1.5-py3-none-any.whl
Installing ConfigArgParse-1.5-py3-none-any.whl to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages
writing requirements to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/ConfigArgParse-1.5-py3.6.egg/EGG-INFO/requires.txt
Adding ConfigArgParse 1.5 to easy-install.pth file
Installed /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/ConfigArgParse-1.5-py3.6.egg
Searching for pycondor>=0.5
Reading https://pypi.org/simple/pycondor/
Downloading https://files.pythonhosted.org/packages/c7/3c/d42efffc487d9de6e8b780e7587dafac642e0774924025e283693dd4b9a6/PyCondor-0.5.0-py2.py3-none-any.whl#sha256=5d2c3f179c00e568271bcbbea88ac4d2523634a481f4b3e56b8346cda2fd6a2b
Best match: PyCondor 0.5.0
Processing PyCondor-0.5.0-py2.py3-none-any.whl
Installing PyCondor-0.5.0-py2.py3-none-any.whl to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages
writing requirements to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/PyCondor-0.5.0-py3.6.egg/EGG-INFO/requires.txt
Adding PyCondor 0.5.0 to easy-install.pth file
Installing pycondor script to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/bin
Installed /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/PyCondor-0.5.0-py3.6.egg
Searching for MarkupSafe>=2.0
Reading https://pypi.org/simple/MarkupSafe/
Downloading https://files.pythonhosted.org/packages/fc/d6/57f9a97e56447a1e340f8574836d3b636e2c14de304943836bd645fa9c7e/MarkupSafe-2.0.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=0446679737af14f45767963a1a9ef7620189912317d095f2d9ffa183a4d25d2b
Best match: MarkupSafe 2.0.1
Processing MarkupSafe-2.0.1-cp36-cp36m-manylinux1_x86_64.whl
Installing MarkupSafe-2.0.1-cp36-cp36m-manylinux1_x86_64.whl to /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages
Adding MarkupSafe 2.0.1 to easy-install.pth file
Installed /home/avi.vajpeyi/projects/rwalk_testing/rwalk_files/envs/modded/lib/python3.6/site-packages/MarkupSafe-2.0.1-py3.6-linux-x86_64.egg
error: tqdm 4.61.1 is installed but tqdm<=4.54.1,>=4.44.0 is required by {'pesummary'}
A temp easy fix would be to force tqdm<=4.54.1,>=4.44.0
in bilby_pipe
, but in the long term, I think PEsummary should allow for newer versions of tqdm
?