initial commit

imported from https://git.ligo.org/lscsoft/lalsuite-archive

commit:8cbd1b7187ce3ed9a825d6ed11cc432f3cfde9a5

.gitattributes

+lal/test/tools/resamp_10x4.eps filter=lfs diff=lfs merge=lfs -text
+lalapps/src/string/S5-L1-cat2.txt filter=lfs diff=lfs merge=lfs -text
+lalpulsar/test/earth00-19-DE421.dat.gz filter=lfs diff=lfs merge=lfs -text
+lalpulsar/test/earth00-19-DE414.dat.gz filter=lfs diff=lfs merge=lfs -text
+lalpulsar/test/earth98.dat filter=lfs diff=lfs merge=lfs -text
+lalsimulation/src/lalsimburst_btlwnbexamples.svg filter=lfs diff=lfs merge=lfs -text
+lalapps/src/inspiral/MachoMasses.dat filter=lfs diff=lfs merge=lfs -text
+lalapps/src/inspiral/test/HL-INJECTIONS_1234_INJ001-866088014-2633400.xml filter=lfs diff=lfs merge=lfs -text
+lalapps/src/pulsar/CreateEphemeris/ephemMLDC.dat filter=lfs diff=lfs merge=lfs -text
+lalframe/test/F-TEST-600000000-60.gwf filter=lfs diff=lfs merge=lfs -text
+lalframe/test/H-CAL_REF_V03-734073939-64.gwf filter=lfs diff=lfs merge=lfs -text
+lalapps/src/inspiral/inspsrcs100Mpc.errors filter=lfs diff=lfs merge=lfs -text
+lalapps/src/string/S6-V1-cat2.txt filter=lfs diff=lfs merge=lfs -text
+lalburst/test/CLRindata.asc filter=lfs diff=lfs merge=lfs -text
+lalinspiral/test/SpaceCovering.par filter=lfs diff=lfs merge=lfs -text
+lalsimulation/src/lalsimburst_sinegaussianexamples.svg filter=lfs diff=lfs merge=lfs -text
+lalapps/src/calibration/S4H1Filters.txt filter=lfs diff=lfs merge=lfs -text
+lalapps/src/pulsar/HeterodyneSearch/H-CW_Injection-875206560-120.gwf filter=lfs diff=lfs merge=lfs -text
+lalframe/test/H-CAL_FAC_V03-729273600-5094000.gwf filter=lfs diff=lfs merge=lfs -text
+lalpulsar/test/earth00-19-DE200.dat.gz filter=lfs diff=lfs merge=lfs -text
+lalapps/src/calibration/S5H1_NoiseCompTimes.txt filter=lfs diff=lfs merge=lfs -text
+lalapps/src/calibration/S5L1_NoiseCompTimes.txt filter=lfs diff=lfs merge=lfs -text
+lalapps/src/string/S6-L1-cat2.txt filter=lfs diff=lfs merge=lfs -text
+lalframe/test/F-TEST-600000060-60.gwf filter=lfs diff=lfs merge=lfs -text
+lalpulsar/test/earth00-19-DE405.dat.gz filter=lfs diff=lfs merge=lfs -text
+lalapps/src/string/S6-H1-cat2.txt filter=lfs diff=lfs merge=lfs -text
+lalframe/test/L-CAL_REF_V03-731488397-64.gwf filter=lfs diff=lfs merge=lfs -text
+lalsimulation/test/reviewed_waveforms.asc filter=lfs diff=lfs merge=lfs -text
+lalapps/src/string/S5-H1H2-cat2.txt filter=lfs diff=lfs merge=lfs -text
+lalapps/src/inspiral/BNSMasses.dat filter=lfs diff=lfs merge=lfs -text
+lalapps/src/string/S5-V1-cat2.txt filter=lfs diff=lfs merge=lfs -text
+lalframe/test/F-TEST-600000120-60.gwf filter=lfs diff=lfs merge=lfs -text
+lalframe/test/L-CAL_FAC_V03-729273600-5094000.gwf filter=lfs diff=lfs merge=lfs -text

.gitignore

+*.dSYM
+*.egg-info
+*.swp
+*.trs
+*~
+.DS_Store
+.dirstamp
+/Makefile
+/Makefile.in
+/_build/
+/_inst/
+/index.html
+/lalsuite-*/
+/lalsuiterc
+TAGS
+aclocal.m4
+auto/
+autom4te.cache/
+config.cache
+config.log
+config.status
+configure
+cscope.*
+lalsuite-*.tar.xz
+lalsuite-user-env.csh
+lalsuite-user-env.fish
+lalsuite-user-env.sh
+lalsuite-user-env.shell
+tags

.mailmap-update

+#!/usr/bin/perl
+
+use strict;
+
+my %name2mails;
+my %cmail2cname;
+
+open IN, ".mailmap" or die $!;
+while (<IN>) {
+  chomp;
+
+  my ($pname, $pmail, $cname, $cmail) = /^([^<]*?)\s*<([^>]*)>(?:\s*([^<]*?)\s*<([^>]*)>)?$/ or die;
+
+  $cmail = $pmail if $cmail eq "";
+
+  $name2mails{$pname}->{$pmail} = -1;
+  $name2mails{$pname}->{$cmail} = 0 if !defined($name2mails{$pname}->{$cmail});
+  $cmail2cname{$cmail} = $cname;
+
+}
+close IN;
+
+open IN, "git shortlog -s -e -n |" or die $!;
+while (<IN>) {
+  chomp;
+
+  my ($n, $cname, $cmail) = m/^\s*(\d+)\s+([^<>]+)\s+<([^>]+)>\s*$/ or die;
+
+  $name2mails{$cname}->{$cmail} = $n if !defined($name2mails{$cname}->{$cmail});
+
+}
+close IN;
+
+foreach my $pname (sort { $a cmp $b } keys(%name2mails)) {
+
+  my $pname2mail = lc($pname);
+  $pname2mail =~ s/\s+/./g;
+
+  my @pmails;
+  push @pmails, grep { /^${pname2mail}[@]ligo[.]org$/ } keys(%{$name2mails{$pname}});
+  push @pmails, grep { /^[a-z.-]+[@]ligo[.]org$/ } keys(%{$name2mails{$pname}});
+  push @pmails, grep { /[@]ligo[.]org$/ } keys(%{$name2mails{$pname}});
+  push @pmails, grep { $name2mails{$pname}->{$_} < 0 } keys(%{$name2mails{$pname}});
+  push @pmails, sort { $name2mails{$pname}->{$b} <=> $name2mails{$pname}->{$a} } keys(%{$name2mails{$pname}});
+  shift @pmails if $pmails[0] =~ /^albert[.]einstein@/i;
+
+  my $pmail = shift @pmails;
+  die "Could not determine email address for $pname" unless defined($pmail);
+
+  next unless keys(%{$name2mails{$pname}}) > 1 || $name2mails{$pname}->{$pmail} <= 0;
+
+  print "$pname <$pmail>\n";
+  foreach my $mail (sort { $a cmp $b } keys(%{$name2mails{$pname}})) {
+    next if $mail eq $pmail;
+    if ($cmail2cname{$mail} ne "") {
+      print "$pname <$pmail> $cmail2cname{$mail} <$mail>\n";
+    } else {
+      print "$pname <$pmail> <$mail>\n";
+    }
+  }
+
+}

00boot

+#!/bin/sh
+
+## function to print error message and exit
+fail () {
+  echo "!!! $0: $1" >&2
+  exit 1
+}
+
+## check script is being run from top-level source directory
+test "$0" = "./00boot" || fail "must be run from top-level source directory"
+
+## remove M4 cache files
+rm -rf autom4te.cache/
+rm -f aclocal.m4
+
+# FIXME: autoreconf from Ubuntu 9.10 (and probably also from recent
+# Debian versions) automatically run libtoolize with the --copy option
+# therefore over writing the supplied libtool scripts with system
+# version. This can lead to unexpected build failures therefore to work
+# round this "feature" we set the LIBTOOLIZE enviroment variable to
+# point to the the true executable which bypasses the running of
+# libtoolize, this will not effect the vast majority of users and those
+# it will effect will know how to run libtoolize, if required.
+
+## run autoreconf
+AUTORECONF=${AUTORECONF:-"autoreconf"}
+echo "00boot: running ${AUTORECONF}"
+LIBTOOLIZE=true ${AUTORECONF} || fail "${AUTORECONF} failed"
+
+echo "
+==================================================
+00boot has been run successfully.
+Now run './configure' with appropriate options
+to configure LALSuite.
+==================================================
+"

Dockerfile

+FROM ligo/lalsuite-runtime:jessie
+COPY /opt/lalsuite /opt/lalsuite
+ENV LD_LIBRARY_PATH="/opt/lalsuite/lib" \
+    OCTAVE_PATH="/opt/lalsuite/lib/x86_64-linux-gnu/octave/3.8.2/site/oct/x86_64-pc-linux-gnu" \
+    PATH="/opt/lalsuite/bin:${PATH}" \
+    PKG_CONFIG_PATH="/opt/lalsuite/lib/pkgconfig" \
+    PYTHONPATH="/opt/lalsuite/lib/python2.7/site-packages" \

Makefile.am

+BUILT_SOURCES =
+sysconf_DATA =
+MOSTLYCLEANFILES =
+EXTRA_DIST =
+include $(top_srcdir)/gnuscripts/lalsuite_top.am
+
+ACLOCAL_AMFLAGS = -I gnuscripts
+
+SUBDIRS = @subdirs@
+
+# Override automake's default rule for rebuilding aclocal.m4, to ensure that
+# ./configure is successfully recreated after certain build system changes which
+# require other autotools (e.g. autoheader) to be re-run. See Redmine issue #728.
+$(ACLOCAL_M4): $(am__aclocal_m4_deps)
+	$(am__cd) $(srcdir) && $(SHELL) ./00boot
+
+# Override automake's default rule for rebuilding ./config.status, to ensure that
+# all changes to the top-level configuration (especially to environment variables it
+# exports) are propagated to the library-level configurations. See Redmine issue #728.
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	$(SHELL) $(top_srcdir)/configure $(ac_configure_args)
+
+.PHONY: cscopelist-subdirs
+cscopelist-am: cscopelist-subdirs
+cscopelist-subdirs:
+	for subdir in $(SUBDIRS); do \
+		sed "s|^|$${subdir}/|" $${subdir}/cscope.files >> $(top_builddir)/cscope.files; \
+	done
+
+user_environment = \
+	`for dir in $(SUBDIRS); do printf 'source %s; ' "$(sysconfdir)/$${dir}-user-env"; done` \
+	$(END_OF_LIST)
+
+BUILT_SOURCES += $(PACKAGE)rc
+sysconf_DATA += $(PACKAGE)rc
+MOSTLYCLEANFILES += $(PACKAGE)rc
+$(PACKAGE)rc: Makefile
+	$(AM_V_GEN)echo "# source this file to access $(PACKAGE_NAME) from Bourne or C shells" >$@; \
+	echo "expr \"X\$$0\" : '^X.*csh' >/dev/null && source $(sysconfdir)/$(PACKAGE)-user-env.csh || . $(sysconfdir)/$(PACKAGE)-user-env.sh" >>$@
+
+if DOXYGEN
+
+html-local: Makefile $(CONFIG_CLEAN_FILES)
+	$(AM_V_at)set -e; \
+	echo "$(subdir)/Makefile: Doxygen documentation was built successfully!"; \
+	echo "$(subdir)/Makefile: $(PACKAGE_NAME) main page is at file://$(abs_builddir)/index.html"
+
+install-html-local: html-local
+	$(AM_V_at)set -e; \
+	echo " $(MKDIR_P) '$(DESTDIR)$(htmldir)'"; \
+	$(MKDIR_P) "$(DESTDIR)$(htmldir)"; \
+	echo " $(INSTALL_DATA) index.html '$(DESTDIR)$(htmldir)/index.html'"; \
+	$(SED) -e 's|\(lal[a-z]*\)/doxygen/out|../\1|g' index.html > $@.tmp; \
+	$(INSTALL_DATA) $@.tmp "$(DESTDIR)$(htmldir)/index.html"; \
+	rm -f $@.tmp; \
+	echo "$(subdir)/Makefile: Doxygen documentation was installed successfully!"; \
+	echo "$(subdir)/Makefile: installed $(PACKAGE_NAME) main page is at file://$(DESTDIR)$(htmldir)/index.html"
+
+uninstall-local:
+	-rm -rf "$(DESTDIR)$(htmldir)/"
+
+endif

configure.ac

+AC_PREREQ([2.63])
+AC_INIT([LALSuite],[6.48.1],[lal-discuss@ligo.org])
+AC_CONFIG_SRCDIR([configure.ac])
+AC_CONFIG_AUX_DIR([gnuscripts])
+AC_CONFIG_MACRO_DIR([gnuscripts])
+AC_PREFIX_DEFAULT(["`pwd`/_inst"])
+AC_CONFIG_FILES([Makefile])
+AM_INIT_AUTOMAKE([ \
+  1.11 \
+  foreign \
+  subdir-objects \
+  color-tests \
+  parallel-tests \
+  tar-ustar \
+  dist-xz \