GitLab

 -user options combination --getMaxFperSeg=0 --SortToplist>=4 now fail
 -log10BSGLtLr only computed and output if log10BSGLtL from main loop is present
  (i.e. for --getMaxFperSeg=1)
 -this makes combination --recalcToplistStats=1 --BSGLlogcorr=1 possible again
 -refs #5146
Original: ac6f6953552dc92d73480454d38ca86fb5e5f94a

- allows 'on the fly' injections into data-files before being analyzed
- adds test script 'testGCT_inject.sh' for testing this feature
- refs #547
Original: 12db610dcfad97ec4d2f5d638f1e006ad0b43293

- Because of code duplication (for having a faster, optimized version of
  toplist candidate handling for recent E@H searches), init of recalc field
  for log10BSGLtL needs to happen in two places
- refs #4638
Original: 5dd5c6526952f7b7b198a33dfdeb00c81954235f

- PredictFstat.c: mark --SignalOnly option as deprecated
- ComputeFstatistic_v2.c: add option --assumeSqrtSX,
  mark --SignalOnly option as deprecated
- HierarchSearchGCT.c: add option --assumeSqrtSX,
  mark --SignalOnly option as deprecated
- testPredictFstat.sh: remove comparison test with --SignalOnly
- testComputeAntennaPattern.sh: adjust PredictFstat command line
- testGCT.sh: remove use of --SignalOnly in sqrtSh=0 test case
- Refs #4780
Original: f0092a462484879cc57b49a2eb70146ada2d71d2

- Is no longer supported, so technically should be
  marked as defunct, rather then deprecated
Original: a4c537fc70004790675100ec41f43df56457452b

Original: 627223777d07e01351fd1d525fdca1610a714351

- Modify calls to XLALInitBarycenter() due to modified interface from LALInitBarycenter()
- LALBarycenter.h: in EphemerisData struct, store ephemeris filenames in fields 'filenameE'
  and 'filenameS' instead of in distinct struct EphemerisFilenames, which is now removed
- LALBarycenter.h: move prototypes for internal functions to LALBarycenter.c
- LALBarycenterTest.c: remove redundant tests of LALBarycenter() against XLALBarycenter(),
  since the former no longer exists (as has been a wrapper of XLALBarycenter() for some time)
Original: 029fb019e63fa5c47510817e7dfdc1463e7858bd

- XLALify LALCheckSFTCatalog() as XLALCheckCRCSFTCatalog(), and
  remove wrapper LALCheckSFTs()
- Move LALWrite_v2SFT_to_v1file() to sole remaining user makefakedata_v4.c
- Move remaining contents of SFTfileIO-LAL.[ch] (various v1 SFT functions)
  to lalapps/src/pulsar/Hough/SFTfileIOv1.[ch] for sole remaining users
- SFTfileIO.h: cleanup references to LAL functions in documentation
- Remove XLALLoadSFTsTest.c; not currently part of test suite, and
  now only compares XLALLoadSFTs() with itself
- SFTfileIOTest.c: add XLALClearErrno() after tests that should fail, remove
  tests of deprecated LALReadTimestampsFile(), remove v1 SFT writing tests
- DriveHough_v3.c, MCInjectHoughS2.c: replace LALSFTtimestampsFromCatalog(),
  which returns UNIQUE timestamps, with XLALTimestampsFromSFTCatalog(),
  which returns ALL timestamps.
Original: 78022855b13fc88cf45a83a53de40a6e75d595dd

- Remove LAL wrapper functions, and covert all calls to XLAL functions
- Add XLALRegisterNamedUvar() macro to support (deprecated) style of
  using individual user variables instead of a struct
- Minor edits to documentation
Original: 12c14ce00cf5f1a5224ea8ee3f71babb5f11076c

- previously only recomputed 'log10BSGL'
- refs #4638
Original: da057d96a671944c68b6cf8bfb2e817390ff44bf

- refs #4488
Original: 970032a6c4cddb6be72fb687114fd9b08efe8d3c

- adapted 'testGCT.sh' to output new timing coefficients
- refs #2119
Original: cd3960a58aac8f0b5f8dc674cbaa6e9460d8f532

- probably unimportant, but to be sure no accuracy issues in summing
  lots of small time contributions
- easy to revert via macro-definition for GETTIME()
- refs #2119
Original: f43d11d5f7c6f4abe76f5f7af9e45a24823e4811

- discussed in more detail in refs #4501
Original: 83480bdf6c4e48772f7e9cd99e0b3e46951e919f

- make sure there's no confusion about which 'Fstar0' we mean:
  semi-coherent, not coherent! ie 'Fstar0sc = Nseg * Fstar0coh'
- refs #2533
Original: 18eabf2a6ec9be9a48f16fe57baa3af403017913

- Remove registered help variables and UVAR_CATEGORY_HELP
- Pass boolean 'should_exit' to XLALUserVarReadAllInput()
  and other functions, which indicates whether program
  should exit with non-zero status
Original: 4d10e8d97c6a5c89c609b44bd3f1e160be8314c8

- Refs #1854
Original: fbd09acd80fbee173ba71031e665c4bcd4045b35

- XLALRegister<...>UserVar() functions now take 'cvar' pointer as first argument
- Requires a literal string for help
- XLALFstatMethodHelpString() now just returns list of F-statistic methods
- Refs #3514
Original: 331af742df01a9c1886b9908f14d70714f455897

- Much more convenient to change program output using lalDebugLevel,
  which already controls other LAL messages. Most programs already
  call LogSetLevel(lalDebugLevel), which actually doesn't make sense
  as they are different quantities (LogLevel is a LogLevel_t enum
  while lalDebugLevel is a bitfield).
- New internal function LogLevel() translates lalDebugLevel into
  sensible LogLevel_t values. Simplify LogPrintf() by removing
  internal function LogPrintf_va().
- Remove calls to LogSetLevel() and deprecate 'logLevel' user option
  in HierarchSearchGCT.c
- Refs #3681
Original: 1476d620fac7a932d22797d77698ab15b36ece5b

 UpdateSemiCohToplistsOptimTriple(), as discovered by Reinhard
 - input values for ComputeB*SGLtL doubly computed
Original: f3d2ad708f2f8aaf238d2f2ef76041e715332b19

 - fixes  #3694
Original: 0695c5c961b0e1a19da1a112b1e1c1d939a3ab51

- call to GCT toplist insertion function passes toplist by reference instead of by value
- specialized version of SemiCoherent Toplist update function for triple toplist case
also some cleaning up:
- toplist naming makes sure first resultfile name is the same as given on commandline (to avoid breaking the logic in the BOINC wrapper for bundled work units)
- more constistent CLA checking
Original: 76b60a985580bede1dc3a37001b6f469966ec9fb

Original: 9ce7f9244c621bb2e4a339e0651c7eb73885315b

Fixed.
Original: 8a469d89a1dad7e70eb96a9003c8eb9ea8f38be5

 - new fields (index of loudest segments) integerated into toplist structure
 - new fields integrated into output of resultfile
 - optional third toplist integrated into checkpointing file I/O
This is a piece from cut-and-paste hell and needs more testing.
Also TODO: extend testGCT.sh to check additional fields and third result file
Original: 42d138e7e32f65ebb44556e7a5db29c42cce5618

Original: dc2a8856584ff5b083f5e5108ccb17c30d98057b

Original: 8552051297940b76c72375d41c6962270ccc06c3

Properly handle case where the hotloop is not SSE2 assembly code optimized, support
tracking of the loudest segment's index in incoherent summing also in this case
Original: d207f31352ac56d053399ff85a2e18cf802bbb3c

Original: 1db09688e8e89f8e845c0292a4febacb82b17ab4

added new fields for keeping the index of the loudest segment per fine grid point already in the incoherent summimg step (as opposed to during the recalc step)
Original: 77795577febc01a793cae0538bc1b173977c6ca0

Original: 48aa8c3d2a028a23a97d1f47f500941a23913433

- separate user-argument --outputTimingDetails=<fname>
- refs #3133
Original: f7cba13274c77409f7278224bf2781836ac7e376

- refs #3133
Original: e620eebdc855c1b27838a255032ccb0284b59b30

 -so that at least the unoptimized version is used for SSE2 too
Original: 35004ec2336b74430456a758899f03d0567ffa7a

- WIP: missing checkpointing of 3rd toplist, file output labels,
  hotloop fmax(F segments)
- refs #2533
Original: 52a0f6d9a250b2a5697509e9ca39274a5360f773

 -not yet in optimized hotloop
 -no used in LTRS
 -but already written to output file
 -introducing print_single_detector_quantities_to_str()
  to clean up file-writing
 -refs #2533
HierarchSearchGCT: output max2F
Original: 20998f5c6148a4b0ec4925d874800249b3995cce

 -BSGLtL
 -BtSGLtL
 -BStSGLtL
 -common denominator function for all transient-line-robust stats
 -always assuming equal ptSl, ptLXl over all segments
 -without log corrections
 -XLALCreateBSGLSetup now requires numSegments
 -refs #2533
Original: 9b6ef9ac53cf0b2d0d2221b87e6b1284c4dd34ef

- this behaviour was changed long time ago, but it seems we forgot to
  update the help string accordingly
- refs #663
Original: b9de3a83a75399b04f66dc2ab09dd5fbb0be7645

- recalc Default Fmethod=SSE fails for Dterms>8
- setup recalc method only when actually used
- fixes #2061
Original: 228fd1b75a522f6e6dbb11fb19ba2dcab8128b54

Original: 24911ae8446f28db34c82b85ff616ef995fc660f