lalpulsar_Makefakedata_v5 error when generating SFTs using .gwf files
Description of problem
Since around a week or so, I've been having a problem when using lalpulsar_Makefakedata_v5 to generate SFTs out of a .gwf file. The issue has been observed in a conda environment, and it's been confirmed by @david-keitel using the current Master.
Expected behaviour
The expected behaviour is to obtain a .sft output file
Steps to reproduce
The error can be reproduced executing the attached example.sh file together with the cache and data.gwf files in the same directory:
Context/environment
The issue has been observed in a conda environment, and it's been confirmed by @david-keitel using the current Master.
System information
Hostname: ldas-pcdev13
Operating system: Rocky Linux 8.6 (Green Obsidian)
Python version: 3.10.6.final.0Conda info
$ conda info
active environment : tfg
active env location : /home/joan-rene.merou/.conda/envs/tfg
shell level : 1
user config file : /home/joan-rene.merou/.condarc
populated config files : /cvmfs/oasis.opensciencegrid.org/ligo/sw/conda/.condarc
/home/joan-rene.merou/.condarc
conda version : 4.14.0
conda-build version : 3.22.0
python version : 3.10.6.final.0
virtual packages : __cuda=11.8=0
__linux=4.18.0=0
__glibc=2.28=0
__unix=0=0
__archspec=1=x86_64
base environment : /cvmfs/oasis.opensciencegrid.org/ligo/sw/conda (read only)
conda av data dir : /cvmfs/oasis.opensciencegrid.org/ligo/sw/conda/etc/conda
conda av metadata url : None[cache](/uploads/02619ebeb4340eec48b4d2be85af68d5/cache)
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/igwn/linux-64
https://conda.anaconda.org/igwn/noarch
package cache : /cvmfs/oasis.opensciencegrid.org/ligo/sw/conda/pkgs
/home/joan-rene.merou/.conda/pkgs
envs directories : /home/joan-rene.merou/.conda/envs
/cvmfs/oasis.opensciencegrid.org/ligo/sw/conda/envs
platform : linux-64
user-agent : conda/4.14.0 requests/2.28.1 CPython/3.10.6 Linux/4.18.0-372.32.1.el8_6.x86_64 rocky/8.6 glibc/2.28
UID:GID : 46341:46341
netrc file : None
offline mode : FalseConda list
$ conda list
# packages in environment at /home/joan-rene.merou/.conda/envs/tfg:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
alsa-lib 1.2.8 h166bdaf_0 conda-forge
anyio 3.6.2 pyhd8ed1ab_0 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py39hb9d737c_3 conda-forge
astropy 5.1.1 py39h2ae25f5_3 conda-forge
asttokens 2.1.0 pyhd8ed1ab_0 conda-forge
attr 2.5.1 h166bdaf_1 conda-forge
attrs 22.1.0 pyh71513ae_1 conda-forge
autoconf 2.69 pl5321hd708f79_11 conda-forge
automake 1.16.5 pl5321ha770c72_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
bc 1.07.1 h7f98852_0 conda-forge
beautifulsoup4 4.11.1 pyha770c72_0 conda-forge
binutils 2.39 hdd6e379_1 conda-forge
binutils_impl_linux-64 2.39 he00db2b_1 conda-forge
binutils_linux-64 2.39 h5fc0e48_11 conda-forge
bleach 5.0.1 pyhd8ed1ab_0 conda-forge
boost 1.78.0 py39h7c9e3ff_4 conda-forge
boost-cpp 1.78.0 h75c5d50_1 conda-forge
brotli 1.0.9 h166bdaf_8 conda-forge
brotli-bin 1.0.9 h166bdaf_8 conda-forge
brotlipy 0.7.0 py39hb9d737c_1005 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
c-compiler 1.5.1 h166bdaf_0 conda-forge
ca-certificates 2022.9.24 ha878542_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cairo 1.16.0 ha61ee94_1014 conda-forge
certifi 2022.9.24 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py39he91dace_2 conda-forge
cfitsio 4.2.0 hd9d235c_0 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
comm 0.1.0 pyhd8ed1ab_0 conda-forge
contourpy 1.0.6 py39hf939315_0 conda-forge
cryptography 36.0.2 py39hd97740a_1 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
debugpy 1.6.3 py39h5a03fae_1 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
doxygen 1.9.5 h583eb01_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.0.4 pyhd8ed1ab_0 conda-forge
executing 1.2.0 pyhd8ed1ab_0 conda-forge
expat 2.5.0 h27087fc_0 conda-forge
fftw 3.3.10 nompi_hf0379b8_105 conda-forge
flit-core 3.8.0 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.1 hc2a2eb6_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.38.0 py39hb9d737c_1 conda-forge
freetype 2.12.1 hca18f0e_0 conda-forge
freezegun 1.2.2 pyhd8ed1ab_0 conda-forge
future 0.18.2 pyhd8ed1ab_6 conda-forge
gcc 10.4.0 hb92f740_11 conda-forge
gcc_impl_linux-64 10.4.0 h5231bdf_19 conda-forge
gcc_linux-64 10.4.0 h9215b83_11 conda-forge
gettext 0.21.1 h27087fc_0 conda-forge
glib 2.74.1 h6239696_1 conda-forge
glib-tools 2.74.1 h6239696_1 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
graphite2 1.3.13 h58526e2_1001 conda-forge
gsl 2.7 he838d99_0 conda-forge
gsoap 2.8.123 h598caef_0 conda-forge
gst-plugins-base 1.21.2 h3e40eee_0 conda-forge
gstreamer 1.21.2 hd4edc92_0 conda-forge
gstreamer-orc 0.4.33 h166bdaf_0 conda-forge
h5py 3.7.0 nompi_py39h817c9c5_102 conda-forge
harfbuzz 5.3.0 h418a68e_0 conda-forge
hdf5 1.12.2 nompi_h2386368_100 conda-forge
healpy 1.16.1 py39hfa9df48_3 conda-forge
help2man 1.49.2 pl5321h166bdaf_0 conda-forge
htcondor 10.1.0 py39hf3d152e_0 conda-forge
htcondor-classads 10.1.0 h5d7ef5f_0 conda-forge
htcondor-utils 10.1.0 hd598b45_0 conda-forge
icu 70.1 h27087fc_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
igwn-auth-utils 0.3.1 pyhd8ed1ab_0 conda-forge
importlib-metadata 5.0.0 pyha770c72_1 conda-forge
importlib_resources 5.10.0 pyhd8ed1ab_0 conda-forge
iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge
ipykernel 6.18.0 pyh210e3f2_0 conda-forge
ipython 8.6.0 pyh41d4057_1 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 8.0.2 pyhd8ed1ab_1 conda-forge
jack 1.9.21 he978b8e_1 conda-forge
jedi 0.18.1 pyhd8ed1ab_2 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
jpeg 9e h166bdaf_2 conda-forge
jsonschema 4.17.0 pyhd8ed1ab_0 conda-forge
jupyter 1.0.0 py39hf3d152e_7 conda-forge
jupyter_client 7.4.7 pyhd8ed1ab_0 conda-forge
jupyter_console 6.4.4 pyhd8ed1ab_0 conda-forge
jupyter_core 5.0.0 py39hf3d152e_0 conda-forge
jupyter_server 1.23.3 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.3 pyhd8ed1ab_0 conda-forge
kernel-headers_linux-64 2.6.32 he073ed8_15 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.4 py39hf939315_1 conda-forge
krb5 1.19.3 h3790be6_0 conda-forge
lalsuite 7.11 pypi_0 pypi
lalwrappers 0a5f845f2c500c32ca45ef0b318fa50458cc89c8 pypi_0 pypi
lame 3.100 h166bdaf_1003 conda-forge
lcms2 2.14 h6ed2654_0 conda-forge
ld_impl_linux-64 2.39 hcc3a1bd_1 conda-forge
ldas-tools-al 2.6.7 h27087fc_3 conda-forge
ldas-tools-framecpp 2.9.1 he3f5635_1 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libblas 3.9.0 16_linux64_openblas conda-forge
libbrotlicommon 1.0.9 h166bdaf_8 conda-forge
libbrotlidec 1.0.9 h166bdaf_8 conda-forge
libbrotlienc 1.0.9 h166bdaf_8 conda-forge
libcap 2.66 ha37c62d_0 conda-forge
libcblas 3.9.0 16_linux64_openblas conda-forge
libclang 15.0.5 default_h2e3cab8_0 conda-forge
libclang13 15.0.5 default_h3a83d3e_0 conda-forge
libcondor_utils 10.1.0 h8f2efde_0 conda-forge
libcups 2.3.3 h3e49a29_2 conda-forge
libcurl 7.86.0 h7bff187_1 conda-forge
libdb 6.2.32 h9c3ff4c_0 conda-forge
libdeflate 1.14 h166bdaf_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.10 h9b69904_4 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.4.2 h27087fc_0 conda-forge
libframel 8.42.2 h166bdaf_1 conda-forge
libgcc-devel_linux-64 10.4.0 hd38fd1e_19 conda-forge
libgcc-ng 12.2.0 h65d4601_19 conda-forge
libgcrypt 1.10.1 h166bdaf_0 conda-forge
libgfortran-ng 12.2.0 h69a702a_19 conda-forge
libgfortran5 12.2.0 h337968e_19 conda-forge
libglib 2.74.1 h606061b_1 conda-forge
libgomp 12.2.0 h65d4601_19 conda-forge
libgpg-error 1.45 hc0c96e0_0 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
liblapack 3.9.0 16_linux64_openblas conda-forge
libllvm15 15.0.5 h63197d8_0 conda-forge
libmetaio 8.5.1 h753d276_1002 conda-forge
libnghttp2 1.47.0 hdcd2b5c_1 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.39 h753d276_0 conda-forge
libpq 14.5 hd77ab85_1 conda-forge
libsanitizer 10.4.0 h5246dfb_19 conda-forge
libsndfile 1.1.0 h27087fc_0 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsqlite 3.40.0 h753d276_0 conda-forge
libssh2 1.10.0 haa6b8db_3 conda-forge
libstdcxx-ng 12.2.0 h46fd767_19 conda-forge
libsystemd0 252 h2a991cd_0 conda-forge
libtiff 4.4.0 h55922b4_4 conda-forge
libtool 2.4.6 h9c3ff4c_1008 conda-forge
libudev1 252 h166bdaf_0 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp-base 1.2.4 h166bdaf_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxkbcommon 1.0.3 he3ba5ed_0 conda-forge
libxml2 2.10.3 h7463322_0 conda-forge
libzlib 1.2.13 h166bdaf_4 conda-forge
ligo-gracedb 2.9.0 pyhd8ed1ab_0 conda-forge
ligo-segments 1.4.0 py39hb9d737c_4 conda-forge
local-utilities 0.0.0 dev_0 <develop>
lscsoft-glue 3.0.1 py39hb9d737c_1 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
m4 1.4.18 h516909a_1001 conda-forge
make 4.3 hd18ef5c_1 conda-forge
markupsafe 2.1.1 py39hb9d737c_2 conda-forge
matplotlib-base 3.6.2 py39hf9fd14e_0 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
metaio 8.5.1 h166bdaf_1002 conda-forge
mistune 2.0.4 pyhd8ed1ab_0 conda-forge
mpfr 4.1.0 h9202a9a_1 conda-forge
mpg123 1.30.2 h27087fc_1 conda-forge
mpi 1.0 openmpi conda-forge
msmagnetarwaveform 0.1 pypi_0 pypi
munge 0.5.13 h4de3113_1 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.31 haf5c9bc_0 conda-forge
mysql-libs 8.0.31 h28c427c_0 conda-forge
nbclassic 0.4.8 pyhd8ed1ab_0 conda-forge
nbclient 0.7.0 pyhd8ed1ab_0 conda-forge
nbconvert 7.2.5 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.2.5 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 7.2.5 pyhd8ed1ab_0 conda-forge
nbformat 5.7.0 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
notebook 6.5.2 pyha770c72_1 conda-forge
notebook-shim 0.2.2 pyhd8ed1ab_0 conda-forge
nspr 4.32 h9c3ff4c_1 conda-forge
nss 3.78 h2350873_0 conda-forge
numpy 1.23.5 py39h3d75532_0 conda-forge
openjpeg 2.5.0 h7d73246_1 conda-forge
openmpi 4.1.4 ha1ae619_101 conda-forge
openssl 1.1.1s h166bdaf_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandoc 2.19.2 h32600fe_1 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
pcre2 10.40 hc3806b6_0 conda-forge
perl 5.32.1 2_h7f98852_perl5 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.2.0 py39hf3a2cdf_3 conda-forge
pip 22.3.1 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
pkg-config 0.29.2 h36c2ea0_1008 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
platformdirs 2.5.2 pyhd8ed1ab_1 conda-forge
pluggy 1.0.0 pyhd8ed1ab_5 conda-forge
ply 3.11 py_1 conda-forge
prometheus_client 0.15.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.33 pyha770c72_0 conda-forge
prompt_toolkit 3.0.33 hd8ed1ab_0 conda-forge
psutil 5.9.4 py39hb9d737c_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pulseaudio 16.1 h4a94279_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pyerfa 2.0.0.1 py39h2ae25f5_3 conda-forge
pygments 2.13.0 pyhd8ed1ab_0 conda-forge
pyjwt 2.6.0 pyhd8ed1ab_0 conda-forge
pyopenssl 22.0.0 pyhd8ed1ab_1 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyqt 5.15.7 py39h18e9c17_2 conda-forge
pyqt5-sip 12.11.0 py39h5a03fae_2 conda-forge
pyrsistent 0.19.2 py39hb9d737c_0 conda-forge
pyrxp 3.0.1 py39hb9d737c_3 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytest 7.2.0 pyhd8ed1ab_2 conda-forge
pytest-runner 6.0.0 pyhd8ed1ab_0 conda-forge
python 3.9.15 h47a2c10_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.16.2 pyhd8ed1ab_0 conda-forge
python-htcondor 10.1.0 py39hef6746d_0 conda-forge
python_abi 3.9 3_cp39 conda-forge
pyyaml 6.0 py39hb9d737c_5 conda-forge
pyzmq 24.0.1 py39headdf64_1 conda-forge
qt-main 5.15.6 h7acdfc8_2 conda-forge
qtconsole 5.4.0 pyhd8ed1ab_0 conda-forge
qtconsole-base 5.4.0 pyha770c72_0 conda-forge
qtpy 2.3.0 pyhd8ed1ab_0 conda-forge
readline 8.1.2 h0f457ee_0 conda-forge
requests 2.28.1 pyhd8ed1ab_1 conda-forge
safe-netrc 1.0.0 py_0 conda-forge
scipy 1.9.3 py39hddc5342_2 conda-forge
scitokens 1.7.1 pyhd8ed1ab_0 conda-forge
scitokens-cpp 0.7.1 h0255ffa_0 conda-forge
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 65.5.1 pyhd8ed1ab_0 conda-forge
sip 6.7.5 py39h5a03fae_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sqlite 3.40.0 h4ff8645_0 conda-forge
stack_data 0.6.1 pyhd8ed1ab_0 conda-forge
swig 4.1.0 h5d7ef5f_4 conda-forge
sysroot_linux-64 2.12 he073ed8_15 conda-forge
terminado 0.17.0 pyh41d4057_0 conda-forge
texlive-core 20210325 ha9dafaf_6 conda-forge
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tornado 6.2 py39hb9d737c_1 conda-forge
traitlets 5.5.0 pyhd8ed1ab_0 conda-forge
typing_extensions 4.4.0 pyha770c72_0 conda-forge
tzdata 2022f h191b570_0 conda-forge
unicodedata2 15.0.0 py39hb9d737c_0 conda-forge
urllib3 1.26.11 pyhd8ed1ab_0 conda-forge
voms 2.1.0rc2 h4fe81f9_7 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.4.2 pyhd8ed1ab_0 conda-forge
wheel 0.38.4 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.3 pyhd8ed1ab_0 conda-forge
xcb-util 0.4.0 h166bdaf_0 conda-forge
xcb-util-image 0.4.0 h166bdaf_0 conda-forge
xcb-util-keysyms 0.4.0 h166bdaf_0 conda-forge
xcb-util-renderutil 0.3.9 h166bdaf_0 conda-forge
xcb-util-wm 0.4.1 h166bdaf_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zipp 3.10.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h166bdaf_4 conda-forge
zstd 1.5.2 h6239696_4 conda-forgecc @rodrigo.tenorio @karl-wette