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rate.py: silence FutureWarning

Kipp Cannon requested to merge (removed):ratefuture into master
  • silence two "Using a non-tuple sequence for multidimensional indexing is deprecated; use arr[tuple(seq)] instead of arr[seq]. In the future this will be interpreted as an array index, arr[np.array(seq)], which will result either in an error or a different result." warnings

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