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[0;msection_start:1590144488:prepare_executor
[0K[0K[36;1mPreparing the "docker" executor[0;m
[0;m[0KUsing Docker executor with image python:3.6 ...
[0;m[0;33mWARNING: Container based cache volumes creation is disabled. Will not create volume for "/cache"
[0;m[0KPulling docker image python:3.6 ...
[0;m[0KUsing docker image sha256:2dfb6d10362398219dcdf87d273dca4e137abf6726c94c1a1409b38aecbd8836 for python:3.6 ...
[0;msection_end:1590144489:prepare_executor
[0Ksection_start:1590144489:prepare_script
[0K[0K[36;1mPreparing environment[0;m
[0;mRunning on runner-qmqxbz1x-project-2963-concurrent-0 via gitlabrunner1...
section_end:1590144494:prepare_script
[0Ksection_start:1590144494:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m
[0;m[32;1mFetching changes...[0;m
Initialized empty Git repository in /builds/lscsoft/pesummary/.git/
[32;1mCreated fresh repository.[0;m
From https://git.ligo.org/lscsoft/pesummary
* [new ref] refs/pipelines/128572 -> refs/pipelines/128572
* [new branch] add-config-page -> origin/add-config-page
* [new branch] add_popular_options -> origin/add_popular_options
* [new branch] add_sky_sensitivity -> origin/add_sky_sensitivity
* [new branch] add_to_existing -> origin/add_to_existing
* [new branch] adding_tests -> origin/adding_tests
* [new branch] build_examples_with_ci -> origin/build_examples_with_ci
* [new branch] common_data_formats -> origin/common_data_formats
* [new branch] duncanmmacleod/pesummary-build-version-helper -> origin/duncanmmacleod/pesummary-build-version-helper
* [new branch] easy_plot -> origin/easy_plot
* [new branch] evolve_parallel -> origin/evolve_parallel
* [new branch] issue101 -> origin/issue101
* [new branch] issue110 -> origin/issue110
* [new branch] issue56 -> origin/issue56
* [new branch] issue76 -> origin/issue76
* [new branch] issue95 -> origin/issue95
* [new branch] jensenshannon -> origin/jensenshannon
* [new branch] joseph.mills/pesummary-master -> origin/joseph.mills/pesummary-master
* [new branch] lalinference_psd -> origin/lalinference_psd
* [new branch] latex_plot -> origin/latex_plot
* [new branch] master -> origin/master
* [new branch] matplotlib_style -> origin/matplotlib_style
* [new branch] metafile -> origin/metafile
* [new branch] optimal -> origin/optimal
* [new branch] package -> origin/package
* [new branch] parallel_tests -> origin/parallel_tests
* [new branch] public_pages -> origin/public_pages
* [new branch] python3.8 -> origin/python3.8
* [new branch] rcparams -> origin/rcparams
* [new branch] redshift_parallel -> origin/redshift_parallel
* [new branch] sccb -> origin/sccb
* [new branch] tidy_up -> origin/tidy_up
* [new branch] update_to_v0.3.3 -> origin/update_to_v0.3.3
* [new branch] updating_to_python3 -> origin/updating_to_python3
* [new branch] weighted_kde -> origin/weighted_kde
* [new branch] wrapper -> origin/wrapper
* [new tag] v"0.5.3" -> v"0.5.3"
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* [new tag] v0.5.3 -> v0.5.3
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[32;1mChecking out 131b45d8 as evolve_parallel...[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1590144498:get_sources
[0Ksection_start:1590144498:restore_cache
[0K[0K[36;1mRestoring cache[0;m
[0;msection_end:1590144500:restore_cache
[0Ksection_start:1590144500:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m
[0;m[32;1mDownloading artifacts for python-3.6 (811387)...[0;m
Downloading artifacts from coordinator... ok [0;m id[0;m=811387 responseStatus[0;m=200 OK token[0;m=VUaRtEz8
[32;1mDownloading artifacts for documentation (811390)...[0;m
Downloading artifacts from coordinator... ok [0;m id[0;m=811390 responseStatus[0;m=200 OK token[0;m=Mz1vPFL5
section_end:1590144505:download_artifacts
[0Ksection_start:1590144505:build_script
[0K[0K[36;1mRunning before_script and script[0;m
[0;m[32;1m$ pip install -r requirements.txt # collapsed multi-line command[0;m
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Building wheels for collected packages: corner, ligo-segments, lscsoft-glue, retrying
Building wheel for corner (setup.py): started
Building wheel for corner (setup.py): finished with status 'done'
Created wheel for corner: filename=corner-2.0.1-py3-none-any.whl size=11643 sha256=e49ea89da5205d2a78e851d290b9900b61387a50b70abd16ab67e8c8b2a58ba7
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Stored in directory: /root/.cache/pip/wheels/8f/ff/f6/1638318e640c6847dac798c3e20a5a8b5ddf88077bf3343dc4
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Created wheel for retrying: filename=retrying-1.3.3-py3-none-any.whl size=11430 sha256=30fa0039c38f6637f54254fb032737e4bbd36cc270bc9262b5dcd5b3f678319a
Stored in directory: /root/.cache/pip/wheels/ac/cb/8a/b27bf6323e2f4c462dcbf77d70b7c5e7868a7fbe12871770cf
Successfully built corner ligo-segments lscsoft-glue retrying
Installing collected packages: numpy, six, h5py, cycler, pyparsing, python-dateutil, kiwisolver, matplotlib, scipy, pytz, pandas, seaborn, patsy, statsmodels, corner, numexpr, tables, deepdish, pygments, astropy, ligo-segments, pycparser, cffi, cryptography, pyOpenSSL, lscsoft-glue, lalsuite, configparser, gwdatafind, tqdm, ligotimegps, gwosc, dqsegdb2, gwpy, retrying, plotly
Successfully installed astropy-4.0.1.post1 cffi-1.14.0 configparser-5.0.0 corner-2.0.1 cryptography-2.9.2 cycler-0.10.0 deepdish-0.3.6 dqsegdb2-1.0.1 gwdatafind-1.0.4 gwosc-0.5.3 gwpy-1.0.1 h5py-2.10.0 kiwisolver-1.2.0 lalsuite-6.70 ligo-segments-1.2.0 ligotimegps-2.0.1 lscsoft-glue-2.0.0 matplotlib-3.2.1 numexpr-2.7.1 numpy-1.18.4 pandas-1.0.3 patsy-0.5.1 plotly-4.7.1 pyOpenSSL-19.1.0 pycparser-2.20 pygments-2.6.1 pyparsing-2.4.7 python-dateutil-2.8.1 pytz-2020.1 retrying-1.3.3 scipy-1.4.1 seaborn-0.10.1 six-1.15.0 statsmodels-0.11.1 tables-3.6.1 tqdm-4.46.0
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Collecting joblib>=0.11
Downloading joblib-0.15.1-py3-none-any.whl (298 kB)
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Building wheels for collected packages: sphinx-argparse, p-astro, python-ligo-lw, ptemcee, astroplan, pyyaml, future
Building wheel for sphinx-argparse (setup.py): started
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Created wheel for sphinx-argparse: filename=sphinx_argparse-0.2.5-py3-none-any.whl size=11551 sha256=defa6803ec2c8657c70965fc055d330874462f3cfb24ef5d0b8b0e9b6f09417f
Stored in directory: /root/.cache/pip/wheels/e5/0b/9c/518ada3197296ddaa5af81521b4a9be21ac6cfc43f640ef257
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Stored in directory: /root/.cache/pip/wheels/a4/b9/06/de7d855e3c2880a787539ec282f7a83cb5047e2a7b4e28f8b9
Building wheel for python-ligo-lw (setup.py): started
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Stored in directory: /root/.cache/pip/wheels/b2/81/be/b4d916ad8976ef27f7463d1619290ee2d2d0bd5b5400153d97
Building wheel for ptemcee (setup.py): started
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Stored in directory: /root/.cache/pip/wheels/a1/63/7c/166ce16bb560da78e2b84a9e7b9b6c9ec518e92b39cbeaa295
Building wheel for pyyaml (setup.py): started
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Created wheel for pyyaml: filename=PyYAML-5.3.1-cp36-cp36m-linux_x86_64.whl size=480451 sha256=e87b1ea8003a90aabfb6053f75ab716e96a887a8d4024942ca6cf860610b448f
Stored in directory: /root/.cache/pip/wheels/e5/9d/ad/2ee53cf262cba1ffd8afe1487eef788ea3f260b7e6232a80fc
Building wheel for future (setup.py): started
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Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=a1a15a177d9dc83073edc6cf1bda6f13a011e2a0c3dc94d78638b53556f19262
Stored in directory: /root/.cache/pip/wheels/6e/9c/ed/4499c9865ac1002697793e0ae05ba6be33553d098f3347fb94
Successfully built sphinx-argparse p-astro python-ligo-lw ptemcee astroplan pyyaml future
Installing collected packages: zipp, importlib-metadata, attrs, wcwidth, pluggy, packaging, more-itertools, py, pytest, coverage, coverage-badge, soupsieve, beautifulsoup4, snowballstemmer, imagesize, alabaster, sphinxcontrib-jsmath, sphinxcontrib-qthelp, sphinxcontrib-htmlhelp, babel, docutils, MarkupSafe, Jinja2, certifi, chardet, idna, urllib3, requests, sphinxcontrib-applehelp, sphinxcontrib-devhelp, sphinxcontrib-serializinghtml, Sphinx, sphinx-argparse, sphinx-rtd-theme, sphinxcontrib-programoutput, testfixtures, healpy, pyyaml, python-ligo-lw, decorator, networkx, future, ligo-gracedb, pillow, ptemcee, astroplan, astropy-healpix, reproject, importlib-resources, ligo.skymap, pepredicates, joblib, scikit-learn, p-astro
Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Sphinx-3.0.3 alabaster-0.7.12 astroplan-0.6 astropy-healpix-0.5 attrs-19.3.0 babel-2.8.0 beautifulsoup4-4.9.1 certifi-2020.4.5.1 chardet-3.0.4 coverage-5.1 coverage-badge-1.0.1 decorator-4.4.2 docutils-0.16 future-0.18.2 healpy-1.13.0 idna-2.9 imagesize-1.2.0 importlib-metadata-1.6.0 importlib-resources-1.5.0 joblib-0.15.1 ligo-gracedb-2.5.0 ligo.skymap-0.2.2 more-itertools-8.3.0 networkx-2.4 p-astro-0.8.2 packaging-20.4 pepredicates-0.0.3 pillow-7.1.2 pluggy-0.13.1 ptemcee-1.0.0 py-1.8.1 pytest-5.4.2 python-ligo-lw-1.6.0 pyyaml-5.3.1 reproject-0.7 requests-2.23.0 scikit-learn-0.22.2.post1 snowballstemmer-2.0.0 soupsieve-2.0.1 sphinx-argparse-0.2.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-programoutput-0.16 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.4 testfixtures-6.14.1 urllib3-1.25.9 wcwidth-0.1.9 zipp-3.1.0
Collecting pycbc
Downloading PyCBC-1.16.1.tar.gz (3.2 MB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing wheel metadata: started
Preparing wheel metadata: finished with status 'done'
Requirement already satisfied: jinja2 in /usr/local/lib/python3.6/site-packages (from pycbc->-r testing_requirements.txt (line 1)) (2.11.2)
Requirement already satisfied: matplotlib>=1.5.1 in /usr/local/lib/python3.6/site-packages (from pycbc->-r testing_requirements.txt (line 1)) (3.2.1)
Collecting mpld3>=0.3
Downloading mpld3-0.3.tar.gz (788 kB)
Requirement already satisfied: numpy>=1.16.0; python_version >= "3.5" in /usr/local/lib/python3.6/site-packages (from pycbc->-r testing_requirements.txt (line 1)) (1.18.4)
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Requirement already satisfied: astropy>=2.0.3; python_version > "3.0" in /usr/local/lib/python3.6/site-packages (from pycbc->-r testing_requirements.txt (line 1)) (4.0.1.post1)
Requirement already satisfied: pillow in /usr/local/lib/python3.6/site-packages (from pycbc->-r testing_requirements.txt (line 1)) (7.1.2)
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Collecting Mako>=1.0.1
Downloading Mako-1.1.2-py2.py3-none-any.whl (75 kB)
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Requirement already satisfied: gwdatafind in /usr/local/lib/python3.6/site-packages (from pycbc->-r testing_requirements.txt (line 1)) (1.0.4)
Collecting cython>=0.29
Using cached Cython-0.29.19-cp36-cp36m-manylinux1_x86_64.whl (2.0 MB)
Collecting emcee==2.2.1
Downloading emcee-2.2.1.tar.gz (24 kB)
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Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib>=1.5.1->pycbc->-r testing_requirements.txt (line 1)) (1.2.0)
Requirement already satisfied: pyOpenSSL in /usr/local/lib/python3.6/site-packages (from lscsoft-glue>=1.59.3->pycbc->-r testing_requirements.txt (line 1)) (19.1.0)
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Requirement already satisfied: cffi!=1.11.3,>=1.8 in /usr/local/lib/python3.6/site-packages (from cryptography>=2.8->pyOpenSSL->lscsoft-glue>=1.59.3->pycbc->-r testing_requirements.txt (line 1)) (1.14.0)
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Building wheels for collected packages: pycbc, mpld3, emcee
Building wheel for pycbc (PEP 517): started
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Created wheel for pycbc: filename=PyCBC-1.16.1-cp36-cp36m-linux_x86_64.whl size=6098242 sha256=7dccd86ce85ad4927ed10c47a398df83ea5ebbd8f21ce9ce21254383dc399428
Stored in directory: /root/.cache/pip/wheels/f6/3e/db/874abbd41f3eab8238241184c9f841346b72ffa0382228d653
Building wheel for mpld3 (setup.py): started
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Created wheel for mpld3: filename=mpld3-0.3-py3-none-any.whl size=116678 sha256=7a232ff6a765a47e064e7a04618456572da6c6a933cdc092a1d7c2f6793261ef
Stored in directory: /root/.cache/pip/wheels/c0/74/c9/ac92f0c4c9eb137d440e86c2822aba0b96b63e608dd5737164
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Created wheel for emcee: filename=emcee-2.2.1-py3-none-any.whl size=29592 sha256=1e61adfbcba837bd2eb8cec02c71f476a6a53c5f23772b33d0f8e2dc6a63ab35
Stored in directory: /root/.cache/pip/wheels/35/d5/c8/cc1a16238e036f053a0ca074bb104c5520f2a5d2aaa13a97d3
Successfully built pycbc mpld3 emcee
Installing collected packages: mpld3, Mako, cython, emcee, pycbc
Successfully installed Mako-1.1.2 cython-0.29.19 emcee-2.2.1 mpld3-0.3 pycbc-1.16.1
Collecting bilby
Downloading bilby-0.6.9.tar.gz (2.1 MB)
Requirement already satisfied: future in /usr/local/lib/python3.6/site-packages (from bilby) (0.18.2)
Collecting dynesty>=1.0.0
Downloading dynesty-1.0.1-py2.py3-none-any.whl (86 kB)
Requirement already satisfied: emcee in /usr/local/lib/python3.6/site-packages (from bilby) (2.2.1)
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Collecting dill
Downloading dill-0.3.1.1.tar.gz (151 kB)
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Requirement already satisfied: python-dateutil>=2.1 in /usr/local/lib/python3.6/site-packages (from matplotlib>=2.0->bilby) (2.8.1)
Requirement already satisfied: pytz>=2017.2 in /usr/local/lib/python3.6/site-packages (from pandas->bilby) (2020.1)
Building wheels for collected packages: bilby, dill
Building wheel for bilby (setup.py): started
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Created wheel for bilby: filename=bilby-0.6.9-py3-none-any.whl size=2177041 sha256=0fe94c8bdc3d7aacdc686a8fa1a50d8e90d29993ca4958c1ff3632f4578becb4
Stored in directory: /root/.cache/pip/wheels/50/d9/13/4963a0fee9aa6761553326321098c9e0271a0b90aeec03bf4c
Building wheel for dill (setup.py): started
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Created wheel for dill: filename=dill-0.3.1.1-py3-none-any.whl size=78530 sha256=c543ee1d4557b9e7fcbef7e96e93e77a0e0224c1c3b78a82cdfe8cdc90172a15
Stored in directory: /root/.cache/pip/wheels/09/84/74/d2b4feb9ac9488bc83c475cb2cbe8e8b7d9cea8320d32f3787
Successfully built bilby dill
Installing collected packages: dynesty, dill, bilby
Successfully installed bilby-0.6.9 dill-0.3.1.1 dynesty-1.0.1
running sdist
generating pesummary/.version
running egg_info
creating pesummary.egg-info
writing pesummary.egg-info/PKG-INFO
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package init file 'pesummary/core/webpage/__init__.py' not found (or not a regular file)
reading manifest file 'pesummary.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pesummary.egg-info/SOURCES.txt'
running check
creating pesummary-0.5.5
creating pesummary-0.5.5/pesummary
creating pesummary-0.5.5/pesummary.egg-info
creating pesummary-0.5.5/pesummary/cli
creating pesummary-0.5.5/pesummary/conf
creating pesummary-0.5.5/pesummary/core
creating pesummary-0.5.5/pesummary/core/css
creating pesummary-0.5.5/pesummary/core/file
creating pesummary-0.5.5/pesummary/core/file/formats
creating pesummary-0.5.5/pesummary/core/js
creating pesummary-0.5.5/pesummary/core/plots
creating pesummary-0.5.5/pesummary/core/webpage
creating pesummary-0.5.5/pesummary/gw
creating pesummary-0.5.5/pesummary/gw/file
creating pesummary-0.5.5/pesummary/gw/file/formats
creating pesummary-0.5.5/pesummary/gw/plots
creating pesummary-0.5.5/pesummary/gw/webpage
creating pesummary-0.5.5/pesummary/io
creating pesummary-0.5.5/pesummary/utils
copying files to pesummary-0.5.5...
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copying pesummary.egg-info/SOURCES.txt -> pesummary-0.5.5/pesummary.egg-info
copying pesummary.egg-info/dependency_links.txt -> pesummary-0.5.5/pesummary.egg-info
copying pesummary.egg-info/entry_points.txt -> pesummary-0.5.5/pesummary.egg-info
copying pesummary.egg-info/requires.txt -> pesummary-0.5.5/pesummary.egg-info
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copying pesummary/core/file/mcmc.py -> pesummary-0.5.5/pesummary/core/file
copying pesummary/core/file/meta_file.py -> pesummary-0.5.5/pesummary/core/file
copying pesummary/core/file/read.py -> pesummary-0.5.5/pesummary/core/file
copying pesummary/core/file/formats/__init__.py -> pesummary-0.5.5/pesummary/core/file/formats
copying pesummary/core/file/formats/base_read.py -> pesummary-0.5.5/pesummary/core/file/formats
copying pesummary/core/file/formats/bilby.py -> pesummary-0.5.5/pesummary/core/file/formats
copying pesummary/core/file/formats/dat.py -> pesummary-0.5.5/pesummary/core/file/formats
copying pesummary/core/file/formats/default.py -> pesummary-0.5.5/pesummary/core/file/formats
copying pesummary/core/file/formats/hdf5.py -> pesummary-0.5.5/pesummary/core/file/formats
copying pesummary/core/file/formats/json.py -> pesummary-0.5.5/pesummary/core/file/formats
copying pesummary/core/file/formats/pesummary.py -> pesummary-0.5.5/pesummary/core/file/formats
copying pesummary/core/js/combine_corner.js -> pesummary-0.5.5/pesummary/core/js
copying pesummary/core/js/grab.js -> pesummary-0.5.5/pesummary/core/js
copying pesummary/core/js/html_to_csv.js -> pesummary-0.5.5/pesummary/core/js
copying pesummary/core/js/html_to_json.js -> pesummary-0.5.5/pesummary/core/js
copying pesummary/core/js/html_to_shell.js -> pesummary-0.5.5/pesummary/core/js
copying pesummary/core/js/modal.js -> pesummary-0.5.5/pesummary/core/js
copying pesummary/core/js/multi_dropbar.js -> pesummary-0.5.5/pesummary/core/js
copying pesummary/core/js/multiple_posteriors.js -> pesummary-0.5.5/pesummary/core/js
copying pesummary/core/js/search.js -> pesummary-0.5.5/pesummary/core/js
copying pesummary/core/js/side_bar.js -> pesummary-0.5.5/pesummary/core/js
copying pesummary/core/plots/__init__.py -> pesummary-0.5.5/pesummary/core/plots
copying pesummary/core/plots/bounded_1d_kde.py -> pesummary-0.5.5/pesummary/core/plots
copying pesummary/core/plots/interactive.py -> pesummary-0.5.5/pesummary/core/plots
copying pesummary/core/plots/kde.py -> pesummary-0.5.5/pesummary/core/plots
copying pesummary/core/plots/latex_labels.py -> pesummary-0.5.5/pesummary/core/plots
copying pesummary/core/plots/main.py -> pesummary-0.5.5/pesummary/core/plots
copying pesummary/core/plots/plot.py -> pesummary-0.5.5/pesummary/core/plots
copying pesummary/core/plots/population.py -> pesummary-0.5.5/pesummary/core/plots
copying pesummary/core/webpage/base.py -> pesummary-0.5.5/pesummary/core/webpage
copying pesummary/core/webpage/main.py -> pesummary-0.5.5/pesummary/core/webpage
copying pesummary/core/webpage/tables.py -> pesummary-0.5.5/pesummary/core/webpage
copying pesummary/core/webpage/webpage.py -> pesummary-0.5.5/pesummary/core/webpage
copying pesummary/gw/__init__.py -> pesummary-0.5.5/pesummary/gw
copying pesummary/gw/command_line.py -> pesummary-0.5.5/pesummary/gw
copying pesummary/gw/cosmology.py -> pesummary-0.5.5/pesummary/gw
copying pesummary/gw/finish.py -> pesummary-0.5.5/pesummary/gw
copying pesummary/gw/inputs.py -> pesummary-0.5.5/pesummary/gw
copying pesummary/gw/p_astro.py -> pesummary-0.5.5/pesummary/gw
copying pesummary/gw/parser.py -> pesummary-0.5.5/pesummary/gw
copying pesummary/gw/pepredicates.py -> pesummary-0.5.5/pesummary/gw
copying pesummary/gw/file/__init__.py -> pesummary-0.5.5/pesummary/gw/file
copying pesummary/gw/file/calibration.py -> pesummary-0.5.5/pesummary/gw/file
copying pesummary/gw/file/conversions.py -> pesummary-0.5.5/pesummary/gw/file
copying pesummary/gw/file/evolve.py -> pesummary-0.5.5/pesummary/gw/file
copying pesummary/gw/file/meta_file.py -> pesummary-0.5.5/pesummary/gw/file
copying pesummary/gw/file/nrutils.py -> pesummary-0.5.5/pesummary/gw/file
copying pesummary/gw/file/psd.py -> pesummary-0.5.5/pesummary/gw/file
copying pesummary/gw/file/read.py -> pesummary-0.5.5/pesummary/gw/file
copying pesummary/gw/file/skymap.py -> pesummary-0.5.5/pesummary/gw/file
copying pesummary/gw/file/standard_names.py -> pesummary-0.5.5/pesummary/gw/file
copying pesummary/gw/file/formats/GWTC1.py -> pesummary-0.5.5/pesummary/gw/file/formats
copying pesummary/gw/file/formats/__init__.py -> pesummary-0.5.5/pesummary/gw/file/formats
copying pesummary/gw/file/formats/base_read.py -> pesummary-0.5.5/pesummary/gw/file/formats
copying pesummary/gw/file/formats/bilby.py -> pesummary-0.5.5/pesummary/gw/file/formats
copying pesummary/gw/file/formats/default.py -> pesummary-0.5.5/pesummary/gw/file/formats
copying pesummary/gw/file/formats/lalinference.py -> pesummary-0.5.5/pesummary/gw/file/formats
copying pesummary/gw/file/formats/pesummary.py -> pesummary-0.5.5/pesummary/gw/file/formats
copying pesummary/gw/plots/__init__.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/bounded_2d_kde.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/bounds.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/cmap.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/cylon.csv -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/detchar.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/latex_labels.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/main.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/plot.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/public.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/publication.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/plots/violin.py -> pesummary-0.5.5/pesummary/gw/plots
copying pesummary/gw/webpage/__init__.py -> pesummary-0.5.5/pesummary/gw/webpage
copying pesummary/gw/webpage/main.py -> pesummary-0.5.5/pesummary/gw/webpage
copying pesummary/gw/webpage/public.py -> pesummary-0.5.5/pesummary/gw/webpage
copying pesummary/io/__init__.py -> pesummary-0.5.5/pesummary/io
copying pesummary/io/read.py -> pesummary-0.5.5/pesummary/io
copying pesummary/io/write.py -> pesummary-0.5.5/pesummary/io
copying pesummary/utils/__init__.py -> pesummary-0.5.5/pesummary/utils
copying pesummary/utils/decorators.py -> pesummary-0.5.5/pesummary/utils
copying pesummary/utils/exceptions.py -> pesummary-0.5.5/pesummary/utils
copying pesummary/utils/samples_dict.py -> pesummary-0.5.5/pesummary/utils
copying pesummary/utils/tqdm.py -> pesummary-0.5.5/pesummary/utils
copying pesummary/utils/utils.py -> pesummary-0.5.5/pesummary/utils
Writing pesummary-0.5.5/setup.cfg
creating dist
Creating tar archive
removing 'pesummary-0.5.5' (and everything under it)
Processing ./dist/pesummary-0.5.5.tar.gz
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing wheel metadata: started
Preparing wheel metadata: finished with status 'done'
Requirement already satisfied: h5py in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (2.10.0)
Requirement already satisfied: corner in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (2.0.1)
Requirement already satisfied: plotly in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (4.7.1)
Requirement already satisfied: deepdish in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (0.3.6)
Requirement already satisfied: pandas in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (1.0.3)
Requirement already satisfied: astropy>=3.2.3 in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (4.0.1.post1)
Requirement already satisfied: numpy>=1.15.4 in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (1.18.4)
Requirement already satisfied: statsmodels in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (0.11.1)
Requirement already satisfied: matplotlib in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (3.2.1)
Requirement already satisfied: tables in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (3.6.1)
Requirement already satisfied: pygments in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (2.6.1)
Requirement already satisfied: gwpy in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (1.0.1)
Requirement already satisfied: configparser in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (5.0.0)
Requirement already satisfied: seaborn in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (0.10.1)
Requirement already satisfied: lalsuite>=6.70.0 in /usr/local/lib/python3.6/site-packages (from pesummary==0.5.5) (6.70)
Requirement already satisfied: six in /usr/local/lib/python3.6/site-packages (from h5py->pesummary==0.5.5) (1.15.0)
Requirement already satisfied: retrying>=1.3.3 in /usr/local/lib/python3.6/site-packages (from plotly->pesummary==0.5.5) (1.3.3)
Requirement already satisfied: scipy in /usr/local/lib/python3.6/site-packages (from deepdish->pesummary==0.5.5) (1.4.1)
Requirement already satisfied: python-dateutil>=2.6.1 in /usr/local/lib/python3.6/site-packages (from pandas->pesummary==0.5.5) (2.8.1)
Requirement already satisfied: pytz>=2017.2 in /usr/local/lib/python3.6/site-packages (from pandas->pesummary==0.5.5) (2020.1)
Requirement already satisfied: patsy>=0.5 in /usr/local/lib/python3.6/site-packages (from statsmodels->pesummary==0.5.5) (0.5.1)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->pesummary==0.5.5) (2.4.7)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->pesummary==0.5.5) (1.2.0)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.6/site-packages (from matplotlib->pesummary==0.5.5) (0.10.0)
Requirement already satisfied: numexpr>=2.6.2 in /usr/local/lib/python3.6/site-packages (from tables->pesummary==0.5.5) (2.7.1)
Requirement already satisfied: ligo-segments>=1.0.0 in /usr/local/lib/python3.6/site-packages (from gwpy->pesummary==0.5.5) (1.2.0)
Requirement already satisfied: dqsegdb2 in /usr/local/lib/python3.6/site-packages (from gwpy->pesummary==0.5.5) (1.0.1)
Requirement already satisfied: tqdm>=4.10.0 in /usr/local/lib/python3.6/site-packages (from gwpy->pesummary==0.5.5) (4.46.0)
Requirement already satisfied: gwosc>=0.4.0 in /usr/local/lib/python3.6/site-packages (from gwpy->pesummary==0.5.5) (0.5.3)
Requirement already satisfied: ligotimegps>=1.2.1 in /usr/local/lib/python3.6/site-packages (from gwpy->pesummary==0.5.5) (2.0.1)
Requirement already satisfied: gwdatafind in /usr/local/lib/python3.6/site-packages (from gwpy->pesummary==0.5.5) (1.0.4)
Requirement already satisfied: lscsoft-glue in /usr/local/lib/python3.6/site-packages (from lalsuite>=6.70.0->pesummary==0.5.5) (2.0.0)
Requirement already satisfied: pyOpenSSL in /usr/local/lib/python3.6/site-packages (from gwdatafind->gwpy->pesummary==0.5.5) (19.1.0)
Requirement already satisfied: cryptography>=2.8 in /usr/local/lib/python3.6/site-packages (from pyOpenSSL->gwdatafind->gwpy->pesummary==0.5.5) (2.9.2)
Requirement already satisfied: cffi!=1.11.3,>=1.8 in /usr/local/lib/python3.6/site-packages (from cryptography>=2.8->pyOpenSSL->gwdatafind->gwpy->pesummary==0.5.5) (1.14.0)
Requirement already satisfied: pycparser in /usr/local/lib/python3.6/site-packages (from cffi!=1.11.3,>=1.8->cryptography>=2.8->pyOpenSSL->gwdatafind->gwpy->pesummary==0.5.5) (2.20)
Building wheels for collected packages: pesummary
Building wheel for pesummary (PEP 517): started
Building wheel for pesummary (PEP 517): finished with status 'done'
Created wheel for pesummary: filename=pesummary-0.5.5-py3-none-any.whl size=294437 sha256=32fc996b5247e9c1fd90f8422964a6f7ea1ffba0ff8a3e4702f5e43cfe29465f
Stored in directory: /root/.cache/pip/wheels/bc/2b/55/3dfae1db55b28359137bf2f8249221e0f401378bfbb5c2cb5c
Successfully built pesummary
Installing collected packages: pesummary
Successfully installed pesummary-0.5.5
[32;1m$ curl https://raw.githubusercontent.com/lscsoft/bilby/master/examples/gw_examples/injection_examples/fast_tutorial.py -o fast_tutorial.py[0;m
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3980 100 3980 0 0 16936 0 --:--:-- --:--:-- --:--:-- 16936
[32;1m$ sed -i '/result.plot_corner()/d' ./fast_tutorial.py[0;m
[32;1m$ sed -i 's/result = bilby.run_sampler(/result = bilby.run_sampler(dlogz=1000, /' ./fast_tutorial.py[0;m
[32;1m$ python fast_tutorial.py[0;m
/usr/local/lib/python3.6/site-packages/bilby/gw/detector/psd.py:356: RuntimeWarning: invalid value encountered in multiply
frequency_domain_strain = self.__power_spectral_density_interpolated(frequencies) ** 0.5 * white_noise
10:51 bilby INFO : Injected signal in H1:
10:51 bilby INFO : optimal SNR = 11.78
10:51 bilby INFO : matched filter SNR = 12.82-2.04j
10:51 bilby INFO : mass_1 = 36.0
10:51 bilby INFO : mass_2 = 29.0
10:51 bilby INFO : a_1 = 0.4
10:51 bilby INFO : a_2 = 0.3
10:51 bilby INFO : tilt_1 = 0.5
10:51 bilby INFO : tilt_2 = 1.0
10:51 bilby INFO : phi_12 = 1.7
10:51 bilby INFO : phi_jl = 0.3
10:51 bilby INFO : luminosity_distance = 2000.0
10:51 bilby INFO : theta_jn = 0.4
10:51 bilby INFO : psi = 2.659
10:51 bilby INFO : phase = 1.3
10:51 bilby INFO : geocent_time = 1126259642.413
10:51 bilby INFO : ra = 1.375
10:51 bilby INFO : dec = -1.2108
10:51 bilby INFO : Injected signal in L1:
10:51 bilby INFO : optimal SNR = 9.53
10:51 bilby INFO : matched filter SNR = 10.03+0.04j
10:51 bilby INFO : mass_1 = 36.0
10:51 bilby INFO : mass_2 = 29.0
10:51 bilby INFO : a_1 = 0.4
10:51 bilby INFO : a_2 = 0.3
10:51 bilby INFO : tilt_1 = 0.5
10:51 bilby INFO : tilt_2 = 1.0
10:51 bilby INFO : phi_12 = 1.7
10:51 bilby INFO : phi_jl = 0.3
10:51 bilby INFO : luminosity_distance = 2000.0
10:51 bilby INFO : theta_jn = 0.4
10:51 bilby INFO : psi = 2.659
10:51 bilby INFO : phase = 1.3
10:51 bilby INFO : geocent_time = 1126259642.413
10:51 bilby INFO : ra = 1.375
10:51 bilby INFO : dec = -1.2108
10:51 bilby INFO : No prior given, using default BBH priors in /usr/local/lib/python3.6/site-packages/bilby/gw/prior_files/precessing_spins_binary_black_holes.prior.
10:51 bilby WARNING : The waveform_generator start_time is not equal to that of the provided interferometers. Overwriting the waveform_generator.
10:51 bilby INFO : Running for label 'fast_tutorial', output will be saved to 'outdir'
10:51 bilby INFO : Using LAL version Branch: None;Tag: lalsuite-v6.70.0;Id: 1f45f4aeb9254841b06113fe05132d5196293a3a;;Builder: Unknown User <>;Repository status: CLEAN: All modifications committed
10:51 bilby INFO : Search parameters:
10:51 bilby INFO : mass_ratio = Uniform(minimum=0.125, maximum=1, name='mass_ratio', latex_label='$q$', unit=None, boundary=None)
10:51 bilby INFO : chirp_mass = Uniform(minimum=25, maximum=100, name='chirp_mass', latex_label='$\\mathcal{M}$', unit=None, boundary=None)
10:51 bilby INFO : luminosity_distance = UniformSourceFrame(minimum=100.0, maximum=5000.0, cosmology=FlatLambdaCDM(name="Planck15", H0=67.7 km / (Mpc s), Om0=0.307, Tcmb0=2.725 K, Neff=3.05, m_nu=[0. 0. 0.06] eV, Ob0=0.0486), name='luminosity_distance', latex_label='$d_L$', unit=Unit("Mpc"), boundary=None)
10:51 bilby INFO : theta_jn = Sine(name='theta_jn', latex_label='$\\theta_{JN}$', unit=None, minimum=0, maximum=3.141592653589793, boundary=None)
10:51 bilby INFO : mass_1 = Constraint(minimum=5, maximum=100, name='mass_1', latex_label='$m_1$', unit=None)
10:51 bilby INFO : mass_2 = Constraint(minimum=5, maximum=100, name='mass_2', latex_label='$m_2$', unit=None)
10:51 bilby INFO : a_1 = 0.4
10:51 bilby INFO : a_2 = 0.3
10:51 bilby INFO : tilt_1 = 0.5
10:51 bilby INFO : tilt_2 = 1.0
10:51 bilby INFO : phi_12 = 1.7
10:51 bilby INFO : phi_jl = 0.3
10:51 bilby INFO : dec = -1.2108
10:51 bilby INFO : ra = 1.375
10:51 bilby INFO : psi = 2.659
10:51 bilby INFO : phase = 1.3
10:51 bilby INFO : geocent_time = 1126259642.413
Traceback (most recent call last):
File "fast_tutorial.py", line 84, in <module>
injection_parameters=injection_parameters, outdir=outdir, label=label)
File "/usr/local/lib/python3.6/site-packages/bilby/core/sampler/__init__.py", line 157, in run_sampler
npool=npool, **kwargs)
File "/usr/local/lib/python3.6/site-packages/bilby/core/sampler/dynesty.py", line 157, in __init__
**kwargs)
File "/usr/local/lib/python3.6/site-packages/bilby/core/sampler/base_sampler.py", line 123, in __init__
self._verify_parameters()
File "/usr/local/lib/python3.6/site-packages/bilby/core/sampler/base_sampler.py", line 286, in _verify_parameters
self.log_likelihood(theta)
File "/usr/local/lib/python3.6/site-packages/bilby/core/sampler/base_sampler.py", line 599, in log_likelihood
return Sampler.log_likelihood(self, theta)
File "/usr/local/lib/python3.6/site-packages/bilby/core/sampler/base_sampler.py", line 395, in log_likelihood
return self.likelihood.log_likelihood()
File "/usr/local/lib/python3.6/site-packages/bilby/gw/likelihood.py", line 583, in log_likelihood
return self.log_likelihood_ratio() + self.noise_log_likelihood()
File "/usr/local/lib/python3.6/site-packages/bilby/gw/likelihood.py", line 288, in log_likelihood_ratio
self.waveform_generator.frequency_domain_strain(self.parameters)
File "/usr/local/lib/python3.6/site-packages/bilby/gw/waveform_generator.py", line 119, in frequency_domain_strain
transformed_model_data_points=self.time_array)
File "/usr/local/lib/python3.6/site-packages/bilby/gw/waveform_generator.py", line 154, in _calculate_strain
self.parameters = parameters
File "/usr/local/lib/python3.6/site-packages/bilby/gw/waveform_generator.py", line 220, in parameters
new_parameters.pop(key)
KeyError: 'mass_1'
section_end:1590144666:build_script
[0Ksection_start:1590144666:after_script
[0K[0K[36;1mRunning after_script[0;m
[0;msection_end:1590144668:after_script
[0Ksection_start:1590144668:upload_artifacts_on_failure
[0K[0K[36;1mUploading artifacts for failed job[0;m
[0;msection_end:1590144669:upload_artifacts_on_failure
[0K[31;1mERROR: Job failed: exit code 1
[0;m