From b468c7d73e3a0af9ac1568ce3244be7263f3607a Mon Sep 17 00:00:00 2001
From: Vivien Raymond <vivien.raymond@ligo.org>
Date: Wed, 24 Oct 2018 16:35:14 -0500
Subject: [PATCH] Update README.rst for new lscsoft location
---
.gitlab-ci.yml | 2 +-
CHANGELOG.md | 5 ++---
CONTRIBUTING.md | 9 ++++-----
README.rst | 16 ++++++++--------
bilby/__init__.py | 4 ++--
setup.py | 2 +-
6 files changed, 18 insertions(+), 20 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index a7951562..bbba1509 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -67,7 +67,7 @@ pages:
script:
- mkdir public/
- mv htmlcov/ public/
- - mv /builds/Monash/bilby/coverage_badge.svg public/
+ - mv coverage_badge.svg public/
- mv docs/_build/html/* public/
artifacts:
paths:
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 7e77e499..3c8e52e2 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -94,7 +94,7 @@ re-instantiate the Prior in most cases
### Added
- InterferometerStrainData now handles both time-domain and frequencu-domain data
-- Adds documentation on setting data (https://monash.docs.ligo.org/bilby/transient-gw-data.html)
+- Adds documentation on setting data (https://lscsoft.docs.ligo.org/bilby/transient-gw-data.html)
- Checkpointing for `dynesty`: the sampling will be checkpointed every 10 minutes (approximately) and can be resumed.
- Add functionality to plot multiple results in a corner plot, see `bilby.core.result.plot_multiple()`.
- Likelihood evaluations are now saved along with the posteriors.
@@ -121,9 +121,8 @@ First `pip` installable version https://pypi.org/project/BILBY/ .
- Major effort to update all docstrings and add some documentation.
- Marginalized likelihoods.
- Examples of searches for gravitational waves from a Supernova and using a sine-Gaussian.
-- A `PriorSet` to handle sets of priors and allows reading in from a standardised prior file (see https://monash.docs.ligo.org/bilby/prior.html).
+- A `PriorSet` to handle sets of priors and allows reading in from a standardised prior file (see https://lscsoft.docs.ligo.org/bilby/prior.html).
- A standardised file for storing detector data.
### Removed
- All chainconsumer dependency as this was causing issues.
-
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 014eae1d..77a2a990 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -9,7 +9,7 @@ Getting started
All the code lives in a git repository (for a short introduction to git, see
[this tutorial](https://docs.gitlab.com/ee/gitlab-basics/start-using-git.html))
-which is hosted here: https://git.ligo.org/Monash/bilby. If you haven't
+which is hosted here: https://git.ligo.org/lscsoft/bilby. If you haven't
already, you should
[fork](https://docs.gitlab.com/ee/gitlab-basics/fork-project.html) the repository
and clone your fork, i.e., on your local machine run
@@ -28,7 +28,7 @@ $ python setup.py develop
which will install `bilby` and, because we used `develop` instead of `install`
when you change the code your installed version will automatically be updated.
----
+---
#### Removing previously installed versions
@@ -62,7 +62,7 @@ you've found a bug or would like a feature it doesn't have, we want to
hear from you!
Our main forum for discussion is the project's [GitLab issue
-tracker](https://git.ligo.org/Monash/bilby/issues). This is the right
+tracker](https://git.ligo.org/lscsoft/bilby/issues). This is the right
place to start a discussion of any of the above or most any other
topic concerning the project.
@@ -157,11 +157,10 @@ you should:
## Code overview
-In this section, we'll give an overview of how the code is structured. This is intended to help orient users and make it easier to contribute. The layout is intended to define the logic of the code and new merge requests should aim to fit within this logic (unless there is a good argument to change it). For example, code which adds a new sampler should not effect the gravitational-wave specific parts of the code. Note that this document is not programatically generated and so may get out of date with time. If you notice something wrong, please open an issue.
+In this section, we'll give an overview of how the code is structured. This is intended to help orient users and make it easier to contribute. The layout is intended to define the logic of the code and new merge requests should aim to fit within this logic (unless there is a good argument to change it). For example, code which adds a new sampler should not effect the gravitational-wave specific parts of the code. Note that this document is not programatically generated and so may get out of date with time. If you notice something wrong, please open an issue.
### Bilby Code Layout
Note this layout is not comprehensive, for example only a few example "Priors" are shown.
-
diff --git a/README.rst b/README.rst
index 60fed740..34f08878 100644
--- a/README.rst
+++ b/README.rst
@@ -6,20 +6,20 @@ Bilby
Fulfilling all your Bayesian inference dreams.
- `Installation
- instructions <https://monash.docs.ligo.org/bilby/installation.html>`__
-- `Contributing <https://git.ligo.org/Monash/bilby/blob/master/CONTRIBUTING.md>`__
-- `Documentation <https://monash.docs.ligo.org/bilby/index.html>`__
-- `Issue tracker <https://git.ligo.org/Monash/bilby/issues>`__
+ instructions <https://lscsoft.docs.ligo.org/bilby/installation.html>`__
+- `Contributing <https://git.ligo.org/lscsoft/bilby/blob/master/CONTRIBUTING.md>`__
+- `Documentation <https://lscsoft.docs.ligo.org/bilby/index.html>`__
+- `Issue tracker <https://git.ligo.org/lscsoft/bilby/issues>`__
We encourage you to contribute to the development via a merge request. For
help in creating a merge request, see `this page
<https://docs.gitlab.com/ee/gitlab-basics/add-merge-request.html>`__ or contact
us directly.
-.. |pipeline status| image:: https://git.ligo.org/Monash/bilby/badges/master/pipeline.svg
- :target: https://git.ligo.org/Monash/bilby/commits/master
-.. |coverage report| image:: https://monash.docs.ligo.org/bilby/coverage_badge.svg
- :target: https://monash.docs.ligo.org/bilby/htmlcov/
+.. |pipeline status| image:: https://git.ligo.org/lscsoft/bilby/badges/master/pipeline.svg
+ :target: https://git.ligo.org/lscsoft/bilby/commits/master
+.. |coverage report| image:: https://lscsoft.docs.ligo.org/bilby/coverage_badge.svg
+ :target: https://lscsoft.docs.ligo.org/bilby/htmlcov/
.. |pypi| image:: https://badge.fury.io/py/bilby.svg
:target: https://pypi.org/project/bilby/
.. |version| image:: https://img.shields.io/pypi/pyversions/bilby.svg
diff --git a/bilby/__init__.py b/bilby/__init__.py
index 57073bbe..5f553582 100644
--- a/bilby/__init__.py
+++ b/bilby/__init__.py
@@ -9,9 +9,9 @@ estimation. It is primarily designed and built for inference of compact
binary coalescence events in interferometric data, but it can also be used for
more general problems.
-The code, and many examples are hosted at https://git.ligo.org/Monash/bilby.
+The code, and many examples are hosted at https://git.ligo.org/lscsoft/bilby.
For installation instructions see
-https://monash.docs.ligo.org/bilby/installation.html.
+https://lscsoft.docs.ligo.org/bilby/installation.html.
"""
diff --git a/setup.py b/setup.py
index 5747efc3..e0c7b326 100644
--- a/setup.py
+++ b/setup.py
@@ -64,7 +64,7 @@ long_description = get_long_description()
setup(name='bilby',
description='A user-friendly Bayesian inference library',
long_description=long_description,
- url='https://git.ligo.org/Monash/bilby',
+ url='https://git.ligo.org/lscsoft/bilby',
author='Greg Ashton, Moritz Huebner, Paul Lasky, Colm Talbot',
author_email='paul.lasky@monash.edu',
license="MIT",
--
GitLab