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Bilby: configuration template updates

What?

This MR allows the gwpy read method called by bilby_pipe to be configurable.

Closes #142 (closed), #154 (closed), and #155 (closed).

Why?

Some frames can't be read with the default bilby_pipe read method, but the read method is configurable in bilby_pipe.

Who?

This MR was prepared by @colm.talbot and @daniel-williams.

Edited by Daniel Williams

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