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Adding documentation, updates to setup, and bayeswave-cpp-pipe

Sophie Hourihanerequested to merge
sophie.hourihane/bayeswave-cpp:documentation_branch into main

NOTE! This means that all executable names have changed!

bayeswave_cpp_pipe.py --> bayeswave-cpp-pipe bayeswave_post.py --> bayeswave-cpp-post pipeline_html_pages.py --> bayeswave-cpp-pipeline-html html_helpers.py --> bayeswave-cpp-html bayeswave_cpp_clean_frame.py --> bayeswave-cpp-clean-frame

There are warnings in bayeswave-cpp-pipe for this now

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