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Bernd Machenschalk
glue
Commits
d3038f99
Commit
d3038f99
authored
15 years ago
by
Duncan Brown
Browse files
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Plain Diff
allow better control over input data and exlusion of segments
parent
5ac06875
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1 changed file
bin/ligolw_publish_dqxml
+32
-21
32 additions, 21 deletions
bin/ligolw_publish_dqxml
with
32 additions
and
21 deletions
bin/ligolw_publish_dqxml
+
32
−
21
View file @
d3038f99
...
...
@@ -79,7 +79,8 @@ parser = OptionParser(
description
=
"
Publishes XML files into the segment database
"
)
parser
.
add_option
(
"
-r
"
,
"
--server
"
,
metavar
=
"
HOST:PORT
"
,
help
=
"
connect to ldbd on HOST:PORT (default port 30020)
"
)
parser
.
add_option
(
"
-d
"
,
"
--spool-directory
"
,
metavar
=
"
DIR
"
,
help
=
"
use DIR as spool directory
"
)
parser
.
add_option
(
"
-s
"
,
"
--state-file
"
,
metavar
=
"
FILE
"
,
help
=
"
read published and excluded segments from FILE
"
)
parser
.
add_option
(
"
-P
"
,
"
--pid-file
"
,
metavar
=
"
FILE
"
,
help
=
"
use FILE as process lock file
"
)
parser
.
add_option
(
"
-D
"
,
"
--input-directory
"
,
metavar
=
"
DIR
"
,
help
=
"
look for input files in DIR
"
)
parser
.
add_option
(
"
-l
"
,
"
--log-file
"
,
metavar
=
"
FILE
"
,
help
=
"
use FILE as log file
"
)
parser
.
add_option
(
"
-L
"
,
"
--log-level
"
,
metavar
=
"
LEVEL
"
,
default
=
"
INFO
"
,
help
=
"
set logging level to LEVEL
"
)
...
...
@@ -105,20 +106,23 @@ if options.ping:
print
msg
sys
.
exit
(
0
)
if
not
options
.
spool_directory
:
raise
ValueError
,
"
missing argument --spool-directory
"
if
not
options
.
state_file
:
raise
ValueError
,
"
missing argument --state-file
"
if
not
options
.
pid_file
:
raise
ValueError
,
"
missing argument --pid-file
"
if
not
options
.
input_directory
:
raise
ValueError
,
"
missing argument --input-directory
"
if
not
options
.
log_file
:
raise
ValueError
,
"
missing argument --log-file
"
lock_file
=
os
.
path
.
join
(
options
.
spool_directory
,
'
publish_dqxml.lock
'
)
if
os
.
access
(
lock_file
,
os
.
F_OK
):
raise
RuntimeError
,
"
lock file exists: %s
"
%
lock_file
else
:
fp
=
open
(
lock_file
,
"
w
"
)
fp
.
write
(
"
lock
"
)
fp
.
close
()
# check for an existing lock file
if
os
.
access
(
options
.
pid_file
,
os
.
F_OK
):
raise
RuntimeError
,
"
lock file exists: %s
"
%
options
.
pid_file
# create lock file
fp
=
open
(
options
.
pid_file
,
"
w
"
)
fp
.
write
(
"
lock
"
)
fp
.
close
()
try
:
# setup the output file
...
...
@@ -135,22 +139,25 @@ try:
logger
.
setLevel
(
eval
(
"
logging.
"
+
options
.
log_level
))
logger
.
info
(
"
ligolw_publish_dqxml starting
"
)
logger
.
debug
(
"
server =
"
+
options
.
server
)
logger
.
debug
(
"
spool directory =
"
+
options
.
spool_directory
)
logger
.
debug
(
"
pid file =
"
+
options
.
pid_file
)
logger
.
debug
(
"
input directory =
"
+
options
.
input_directory
)
logger
.
debug
(
"
log file =
"
+
options
.
log_file
)
logger
.
debug
(
"
log level =
"
+
options
.
log_level
)
# read in the published file and get the published segment list
state_file
=
os
.
path
.
join
(
options
.
spool_directory
,
"
published.xml
"
)
logger
.
debug
(
"
reading state from %s
"
%
state_file
)
indoc
=
ligolw_utils
.
load_url
(
state_file
,
gz
=
(
state_file
or
"
stdin
"
).
endswith
(
"
.gz
"
))
logger
.
debug
(
"
reading state from %s
"
%
options
.
state_file
)
indoc
=
ligolw_utils
.
load_url
(
options
.
state_file
,
gz
=
(
options
.
state_file
or
"
stdin
"
).
endswith
(
"
.gz
"
))
published_segments
=
segmentdb_utils
.
find_segments
(
indoc
,
"
P1:PUBLISHED:0
"
)
exclude_segments
=
segmentdb_utils
.
find_segments
(
indoc
,
"
P1:EXCLUDE:0
"
)
logger
.
debug
(
"
published segments = %s
"
%
str
(
published_segments
))
logger
.
debug
(
"
excluded segments = %s
"
%
str
(
exclude_segments
))
# FIXME this will break Sep 14 2011 01:46:24 UTC
all_time
=
segments
.
segmentlist
([
segments
.
segment
(
0
,
999999999
)])
# make a list of the files that need to be inserted
pending_segments
=
all_time
-
published_segments
pending_segments
=
(
all_time
-
published_segments
)
-
exclude_segments
logger
.
info
(
"
pending segments = %s
"
%
str
(
pending_segments
))
pending_files
=
lal
.
Cache
()
for
s
in
pending_segments
:
pending_files
+=
lal
.
Cache
.
from_urls
(
segmentdb_utils
.
get_all_files_in_range
(
options
.
input_directory
,
s
[
0
],
s
[
1
]),
coltype
=
int
).
sieve
(
segment
=
s
)
...
...
@@ -179,12 +186,16 @@ try:
else
:
published_segments
|=
segments
.
segmentlist
([
f
.
segment
])
segment_def_id
=
segmentdb_utils
.
add_to_segment_definer
(
outdoc
,
proc_id
,
"
P1
"
,
"
PUBLISHED
"
,
0
)
segmentdb_utils
.
add_to_segment
(
outdoc
,
proc_id
,
segment_def_id
,
published_segments
)
excl_def_id
=
segmentdb_utils
.
add_to_segment_definer
(
outdoc
,
proc_id
,
"
P1
"
,
"
EXCLUDE
"
,
0
)
pub_def_id
=
segmentdb_utils
.
add_to_segment_definer
(
outdoc
,
proc_id
,
"
P1
"
,
"
PUBLISHED
"
,
0
)
segmentdb_utils
.
add_to_segment
(
outdoc
,
proc_id
,
pub_def_id
,
exclude_segments
)
segmentdb_utils
.
add_to_segment
(
outdoc
,
proc_id
,
excl_def_id
,
published_segments
)
logger
.
debug
(
"
published segments = %s
"
%
str
(
published_segments
))
logger
.
debug
(
"
excluded segments = %s
"
%
str
(
exclude_segments
))
# write the new segment state file on top of the old one
logger
.
debug
(
"
writing state to %s
"
%
state_file
)
ligolw_utils
.
write_filename
(
outdoc
,
state_file
)
logger
.
debug
(
"
writing state to %s
"
%
options
.
state_file
)
ligolw_utils
.
write_filename
(
outdoc
,
options
.
state_file
)
except
Exception
,
e
:
try
:
...
...
@@ -192,9 +203,9 @@ except Exception, e:
except
:
pass
print
>>
sys
.
stderr
,
"
runtime error (%s)
"
%
str
(
e
)
os
.
unlink
(
lock
_file
)
os
.
unlink
(
options
.
pid
_file
)
sys
.
exit
(
1
)
logger
.
info
(
"
exiting
"
)
os
.
unlink
(
lock
_file
)
os
.
unlink
(
options
.
pid
_file
)
sys
.
exit
(
0
)
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