Fix minor bugs from merge

bilby_pipe/main.py

@@ -118,7 +118,7 @@ class Input(object):
             try:
                 cert_path = os.environ[cert_alias]
                 new_cert_path = os.path.join(
-                    self.outdir, os.path.basename(cert_path))
+                    self.outdir, '.' + os.path.basename(cert_path))
                 shutil.copyfile(cert_path, new_cert_path)
                 self._x509userproxy = new_cert_path
             except KeyError:

bilby_pipe/script_helper.py

@@ -60,8 +60,6 @@ def create_default_parser():
     parser.add(
         '--time-marginalization', action='store_true', default=True,
         help='If true, use a time-marginalized likelihood')
-    parser.add('--outdir', default='outdir', help='Output directory')
-    parser.add('--label', default='outdir', help='Output label')
     parser.add('--sampler', default=None)
     parser.add('--sampler-kwargs', default=None)
     parser.add('--outdir', default='outdir', help='Output directory')

tests/dag_test.py

@@ -36,7 +36,7 @@ class TestDag(unittest.TestCase):
         expected_jobs = [dict(detectors=['H1', 'L1'], sampler='nestle'),
                          dict(detectors=['H1'], sampler='nestle'),
                          dict(detectors=['L1'], sampler='nestle')]
-        self.assertEqual(dag.jobs, expected_jobs)
+        self.assertEqual(dag.jobs_inputs, expected_jobs)
 
     # def test_build_submit(self):
     #     test_args = copy.copy(self.test_args)