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Commit 30e4de4f authored by Matthew David Pitkin's avatar Matthew David Pitkin Committed by Gregory Ashton
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Add dnest4 to the test Docker containers

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containers/Dockerfile-test-suite-python27
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View file @ 30e4de4f
......@@ -41,7 +41,7 @@ coverage-badge
RUN pip install corner lalsuite astropy gwpy theano
# Install samplers
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4
# Install pymultinest requirements
RUN apt-get install -y libblas3 libblas-dev liblapack3 liblapack-dev \
......@@ -55,7 +55,7 @@ ENV LD_LIBRARY_PATH $HOME/MultiNest/MultiNest_v3.11_CMake/multinest/lib:
# Install Polychord
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && make pypolychord MPI= && python setup.py install)
&& (cd PolyChordLite && python setup.py --no-mpi install)
# Install PTMCMCSampler
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
......
containers/Dockerfile-test-suite-python37
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View file @ 30e4de4f
......@@ -48,7 +48,7 @@ RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs
RUN pip install corner lalsuite astropy gwpy theano healpy
# Install samplers
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4
# Install pymultinest requirements
RUN apt-get install -y libblas3 libblas-dev liblapack3 liblapack-dev \
......@@ -62,7 +62,7 @@ ENV LD_LIBRARY_PATH $HOME/MultiNest/MultiNest_v3.11_CMake/multinest/lib:
# Install Polychord
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && make pypolychord MPI= && python setup.py install)
&& (cd PolyChordLite && python setup.py --no-mpi install)
# Install PTMCMCSampler
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
......
containers/v2-dockerfile-test-suite-python35
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− 2
View file @ 30e4de4f
......@@ -35,7 +35,7 @@ RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner lalsuite theano healpy cython
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4
# Install multinest
RUN git clone https://github.com/farhanferoz/MultiNest.git \
......@@ -45,7 +45,7 @@ ENV LD_LIBRARY_PATH $HOME/MultiNest/MultiNest_v3.12_CMake/multinest/lib:
# Install Polychord
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && make pypolychord MPI= && python setup.py install)
&& (cd PolyChordLite && python setup.py --no-mpi install)
# Install PTMCMCSampler
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
......
containers/v2-dockerfile-test-suite-python36
+ 2
− 2
View file @ 30e4de4f
......@@ -35,7 +35,7 @@ RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner lalsuite theano healpy cython
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4
# Install multinest
RUN git clone https://github.com/farhanferoz/MultiNest.git \
......@@ -45,7 +45,7 @@ ENV LD_LIBRARY_PATH $HOME/MultiNest/MultiNest_v3.12_CMake/multinest/lib:
# Install Polychord
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && make pypolychord MPI= && python setup.py install)
&& (cd PolyChordLite && python setup.py --no-mpi install)
# Install PTMCMCSampler
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
......
containers/v2-dockerfile-test-suite-python37
+ 2
− 2
View file @ 30e4de4f
......@@ -35,7 +35,7 @@ RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner lalsuite theano healpy cython
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4
# Install multinest
RUN git clone https://github.com/farhanferoz/MultiNest.git \
......@@ -45,7 +45,7 @@ ENV LD_LIBRARY_PATH $HOME/MultiNest/MultiNest_v3.12_CMake/multinest/lib:
# Install Polychord
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && make pypolychord MPI= && python setup.py install)
&& (cd PolyChordLite && python setup.py --no-mpi install)
# Install PTMCMCSampler
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
......
containers/v2-dockerfile-test-suite-python38
+ 2
− 2
View file @ 30e4de4f
......@@ -35,7 +35,7 @@ RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner lalsuite theano healpy cython
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4
# Install multinest
RUN git clone https://github.com/farhanferoz/MultiNest.git \
......@@ -45,7 +45,7 @@ ENV LD_LIBRARY_PATH $HOME/MultiNest/MultiNest_v3.12_CMake/multinest/lib:
# Install Polychord
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && make pypolychord MPI= && python setup.py install)
&& (cd PolyChordLite && python setup.py --no-mpi install)
# Install PTMCMCSampler
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
......
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