Fix bug

?

bilby/gw/prior_files/GW150914.prior

-# These are the default priors for analysing GW150914.
-mass_1 = Uniform(name='mass_1', minimum=30, maximum=50, unit='$M_{\odot}$', boundary=None)
-mass_2 = Uniform(name='mass_2', minimum=20, maximum=40, unit='$M_{\odot}$', boundary=None)
-mass_ratio = Constraint(name='mass_ratio', minimum=0.125, maximum=1)
-a_1 = Uniform(name='a_1', minimum=0, maximum=0.8, boundary='reflective')
-a_2 = Uniform(name='a_2', minimum=0, maximum=0.8, boundary='reflective')
-tilt_1 = Sine(name='tilt_1', boundary='reflective')
-tilt_2 = Sine(name='tilt_2', boundary='reflective')
-phi_12 = Uniform(name='phi_12', minimum=0, maximum=2 * np.pi, boundary='periodic')
-phi_jl = Uniform(name='phi_jl', minimum=0, maximum=2 * np.pi, boundary='periodic')
-luminosity_distance = bilby.gw.prior.UniformSourceFrame(name='luminosity_distance', minimum=1e2, maximum=1e3, unit='Mpc', boundary=None)
-dec = Cosine(name='dec', boundary='reflective')
-ra = Uniform(name='ra', minimum=0, maximum=2 * np.pi, boundary='periodic')
-theta_jn = Sine(name='theta_jn', boundary='reflective')
-psi = Uniform(name='psi', minimum=0, maximum=np.pi, boundary='periodic')
-phase = Uniform(name='phase', minimum=0, maximum=2 * np.pi, boundary='periodic')
-geocent_time = Uniform(1126259462.322, 1126259462.522, name='geocent_time', unit='$s$', boundary=None)
-# These are the calibration parameters as described in
-# https://journals.aps.org/prx/abstract/10.1103/PhysRevX.6.041015
-# recalib_H1_frequency_0 = 20
-# recalib_H1_frequency_1 = 54
-# recalib_H1_frequency_2 = 143
-# recalib_H1_frequency_3 = 383
-# recalib_H1_frequency_4 = 1024
-# recalib_H1_amplitude_0 = Gaussian(mu=0, sigma=0.048, name='recalib_H1_amplitude_0), '$\\delta A_{H0}$'
-# recalib_H1_amplitude_1 = Gaussian(mu=0, sigma=0.048, name='recalib_H1_amplitude_1), '$\\delta A_{H1}$'
-# recalib_H1_amplitude_2 = Gaussian(mu=0, sigma=0.048, name='recalib_H1_amplitude_2), '$\\delta A_{H2}$'
-# recalib_H1_amplitude_3 = Gaussian(mu=0, sigma=0.048, name='recalib_H1_amplitude_3), '$\\delta A_{H3}$'
-# recalib_H1_amplitude_4 = Gaussian(mu=0, sigma=0.048, name='recalib_H1_amplitude_4), '$\\delta A_{H4}$'
-# recalib_H1_phase_0 = Gaussian(mu=0, sigma=0.056, name='recalib_H1_phase_0', '$\\delta \\phi_{H0}$')
-# recalib_H1_phase_1 = Gaussian(mu=0, sigma=0.056, name='recalib_H1_phase_1', '$\\delta \\phi_{H1}$')
-# recalib_H1_phase_2 = Gaussian(mu=0, sigma=0.056, name='recalib_H1_phase_2', '$\\delta \\phi_{H2}$')
-# recalib_H1_phase_3 = Gaussian(mu=0, sigma=0.056, name='recalib_H1_phase_3', '$\\delta \\phi_{H3}$')
-# recalib_H1_phase_4 = Gaussian(mu=0, sigma=0.056, name='recalib_H1_phase_4', '$\\delta \\phi_{H4}$')
-# recalib_L1_frequency_0 = 20
-# recalib_L1_frequency_1 = 54
-# recalib_L1_frequency_2 = 143
-# recalib_L1_frequency_3 = 383
-# recalib_L1_frequency_4 = 1024
-# recalib_L1_amplitude_0 = Gaussian(mu=0, sigma=0.082, name='recalib_L1_amplitude_0), '$\\delta A_{L0}$'
-# recalib_L1_amplitude_1 = Gaussian(mu=0, sigma=0.082, name='recalib_L1_amplitude_1), '$\\delta A_{L1}$'
-# recalib_L1_amplitude_2 = Gaussian(mu=0, sigma=0.082, name='recalib_L1_amplitude_2), '$\\delta A_{L2}$'
-# recalib_L1_amplitude_3 = Gaussian(mu=0, sigma=0.082, name='recalib_L1_amplitude_3), '$\\delta A_{L3}$'
-# recalib_L1_amplitude_4 = Gaussian(mu=0, sigma=0.082, name='recalib_L1_amplitude_4), '$\\delta A_{L4}$'
-# recalib_L1_phase_0 = Gaussian(mu=0, sigma=0.073, name='recalib_L1_phase_0', '$\\delta \\phi_{L0}$')
-# recalib_L1_phase_1 = Gaussian(mu=0, sigma=0.073, name='recalib_L1_phase_1', '$\\delta \\phi_{L1}$')
-# recalib_L1_phase_2 = Gaussian(mu=0, sigma=0.073, name='recalib_L1_phase_2', '$\\delta \\phi_{L2}$')
-# recalib_L1_phase_3 = Gaussian(mu=0, sigma=0.073, name='recalib_L1_phase_3', '$\\delta \\phi_{L3}$')
-# recalib_L1_phase_4 = Gaussian(mu=0, sigma=0.073, name='recalib_L1_phase_4', '$\\delta \\phi_{L4}$')

docs/examples.txt

@@ -2,32 +2,32 @@
 Examples
 ========
 
-1. `General inference examples <https://git.ligo.org/lscsoft/bilby/tree/master/examples/other_examples>`_
+1. `General inference examples <https://git.ligo.org/lscsoft/bilby/tree/master/examples/core_examples>`_
+   - `A simple Gaussian likelihood <https://git.ligo.org/lscsoft/bilby/blob/master/examples/core_examples/gaussian_example.py>`_: a good example to see how to write your own likelihood.
+   - `Linear regression for unknown noise <https://git.ligo.org/lscsoft/bilby/blob/master/examples/core_examples/linear_regression_unknown_noise.py>`_: fitting to general time-domain data.
 
-   - `A simple Gaussian likelihood <https://git.ligo.org/lscsoft/bilby/blob/master/examples/other_examples/gaussian_example.py>`_: a good example to see how to write your own likelihood.
-   - `Linear regression for unknown noise <https://git.ligo.org/lscsoft/bilby/blob/master/examples/other_examples/linear_regression_unknown_noise.py>`_: fitting to general time-domain data.
 
 2. `Examples of injecting and recovering
-   data <https://git.ligo.org/lscsoft/bilby/tree/master/examples/injection_examples>`__
-
+   data <https://git.ligo.org/lscsoft/bilby/tree/master/examples/gw_examples/injection_examples>`__
    -  `4-parameter CBC
-      tutorial <https://git.ligo.org/lscsoft/bilby/blob/master/examples/injection_examples/fast_tutorial.py>`__
+      tutorial <https://git.ligo.org/lscsoft/bilby/blob/master/examples/gw_examples/injection_examples/fast_tutorial.py>`__
    -  `15-parameter CBC tutorial
-      <https://git.ligo.org/lscsoft/bilby/blob/master/examples/injection_examples/fast_tutorial.py>`__
+      <https://git.ligo.org/lscsoft/bilby/blob/master/examples/gw_examples/injection_examples/standard_15d_cbc_tutorial.py>`__
    -  `Create your own source
-      model <https://git.ligo.org/lscsoft/bilby/blob/master/examples/injection_examples/create_your_own_source_model.py>`__
+      model <https://git.ligo.org/lscsoft/bilby/blob/master/examples/gw_examples/injection_examples/create_your_own_source_model.py>`__
    -  `Create your own time-domain source
-      model <https://git.ligo.org/lscsoft/bilby/blob/master/examples/injection_examples/create_your_own_time_domain_source_model.py>`__
+      model <https://git.ligo.org/lscsoft/bilby/blob/master/examples/gw_examples/injection_examples/create_your_own_time_domain_source_model.py>`__
    -  `How to specify the
-      prior <https://git.ligo.org/lscsoft/bilby/blob/master/examples/injection_examples/how_to_specify_the_prior.py>`__
+      prior <https://git.ligo.org/lscsoft/bilby/blob/master/examples/gw_examples/injection_examples/how_to_specify_the_prior.py>`__
    -  `Using a partially marginalized
-      likelihood <https://git.ligo.org/lscsoft/bilby/blob/master/examples/injection_examples/marginalized_likelihood.py>`__
+      likelihood <https://git.ligo.org/lscsoft/bilby/blob/master/examples/gw_examples/injection_examples/marginalized_likelihood.py>`__
 
-3. `Examples using open
-   data <https://git.ligo.org/lscsoft/bilby/tree/master/examples/open_data_examples>`__
 
+3. `Examples using open
+   data <https://git.ligo.org/lscsoft/bilby/tree/master/examples/gw_examples/data_examples>`__
    -  `Analysing the first Binary Black hole detection,
-      GW150914 <https://git.ligo.org/lscsoft/bilby/blob/master/examples/open_data_examples/GW150914.py>`__
+      GW150914 <https://git.ligo.org/lscsoft/bilby/blob/master/examples/gw_examples/data_examples/GW150914.py>`__
+
 
 4. `Notebook-style
    tutorials <https://git.ligo.org/lscsoft/bilby/tree/master/examples/tutorials>`__

examples/README.rst

+========
+Examples
+========
+
+Here we host a large number of example scripts separated into core_examples,
+which demonstrate the core features of :code:`bilby`, and gw_examples, which
+demonstrate the gravitational-wave-specific features of :code:`bilby`. Finally,
+there is also a directory containing various tutorials in the form of
+notebooks.
+
+The :code:`basic_tutorial.py` example discussed in arXiv:1811.02042 has been
+renamed to `gw_examples/injection_examples/fast_tutorial.py
+<https://git.ligo.org/lscsoft/bilby/tree/master/examples/gw_examples/injection_examples/fast_tutorial.py>`_.
+