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Commit cc9a73fd authored by Colm Talbot's avatar Colm Talbot
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Merge branch 'fix-docker-bubild' into 'master' 

Fix docker build

See merge request !1044
parents 374ea0f8 d7eb4466
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1 merge request!1044Fix docker build
Pipeline #340222 failed
Stage: initial
Stage: test
Stage: docs
Stage: deploy
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containers/dockerfile-template
+ 18
− 11
View file @ cc9a73fd
......@@ -13,31 +13,34 @@ RUN /bin/bash -c "source activate ${{conda_env}}"
RUN conda info
RUN python --version
# Install pymultinest requirements
RUN apt-get update --allow-releaseinfo-change
RUN apt-get install -y libblas3 libblas-dev liblapack3 liblapack-dev \
libatlas3-base libatlas-base-dev cmake build-essential gfortran
# Install conda-installable programs
RUN conda install -n ${{conda_env}} -y matplotlib numpy scipy pandas astropy flake8 mock
RUN conda install -n ${{conda_env}} -c anaconda coverage configargparse future
# Install conda-forge-installable programs
RUN conda install -n ${{conda_env}} -c conda-forge black ligo-gracedb gwpy lalsuite ligo.skymap pytest-cov deepdish arviz
RUN conda install -n ${{conda_env}} -c conda-forge black pytest-cov deepdish arviz
# Install pip-requirements
RUN pip install --upgrade pip
RUN pip install --upgrade setuptools coverage-badge
RUN pip install --upgrade setuptools coverage-badge parameterized
# Install documentation requirements
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner lalsuite theano healpy cython tables
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 kombine dnest4 nessai zeus-mcmc
RUN pip install corner theano healpy cython tables
RUN conda install -n ${{conda_env}} -c conda-forge dynesty emcee nestle ptemcee
RUN conda install -n ${{conda_env}} -c conda-forge pymultinest ultranest
RUN conda install -n ${{conda_env}} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
RUN conda install -n ${{conda_env}} -c conda-forge pytorch
RUN pip install nessai
# Install Polychord
RUN apt-get update --allow-releaseinfo-change
RUN apt-get install -y build-essential
RUN apt-get install -y libblas3 libblas-dev
RUN apt-get install -y liblapack3 liblapack-dev
RUN apt-get install -y libatlas3-base libatlas-base-dev
RUN apt-get install -y gfortran
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && python setup.py --no-mpi install)
......@@ -45,6 +48,10 @@ RUN git clone https://github.com/PolyChord/PolyChordLite.git \
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
&& (cd PTMCMCSampler && python setup.py install)
# Install GW packages
RUN conda install -n ${{conda_env}} -c conda-forge python-lalsimulation
RUN pip install ligo-gracedb gwpy ligo.skymap
# Add the ROQ data to the image
RUN mkdir roq_basis \
&& cd roq_basis \
......
containers/v3-dockerfile-test-suite-python37
+ 18
− 11
View file @ cc9a73fd
......@@ -15,31 +15,34 @@ RUN /bin/bash -c "source activate ${conda_env}"
RUN conda info
RUN python --version
# Install pymultinest requirements
RUN apt-get update --allow-releaseinfo-change
RUN apt-get install -y libblas3 libblas-dev liblapack3 liblapack-dev \
libatlas3-base libatlas-base-dev cmake build-essential gfortran
# Install conda-installable programs
RUN conda install -n ${conda_env} -y matplotlib numpy scipy pandas astropy flake8 mock
RUN conda install -n ${conda_env} -c anaconda coverage configargparse future
# Install conda-forge-installable programs
RUN conda install -n ${conda_env} -c conda-forge black ligo-gracedb gwpy lalsuite ligo.skymap pytest-cov deepdish arviz
RUN conda install -n ${conda_env} -c conda-forge black pytest-cov deepdish arviz
# Install pip-requirements
RUN pip install --upgrade pip
RUN pip install --upgrade setuptools coverage-badge
RUN pip install --upgrade setuptools coverage-badge parameterized
# Install documentation requirements
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner lalsuite theano healpy cython tables
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 kombine dnest4 nessai zeus-mcmc
RUN pip install corner theano healpy cython tables
RUN conda install -n ${conda_env} -c conda-forge dynesty emcee nestle ptemcee
RUN conda install -n ${conda_env} -c conda-forge pymultinest ultranest
RUN conda install -n ${conda_env} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
RUN conda install -n ${conda_env} -c conda-forge pytorch
RUN pip install nessai
# Install Polychord
RUN apt-get update --allow-releaseinfo-change
RUN apt-get install -y build-essential
RUN apt-get install -y libblas3 libblas-dev
RUN apt-get install -y liblapack3 liblapack-dev
RUN apt-get install -y libatlas3-base libatlas-base-dev
RUN apt-get install -y gfortran
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && python setup.py --no-mpi install)
......@@ -47,6 +50,10 @@ RUN git clone https://github.com/PolyChord/PolyChordLite.git \
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
&& (cd PTMCMCSampler && python setup.py install)
# Install GW packages
RUN conda install -n ${conda_env} -c conda-forge python-lalsimulation
RUN pip install ligo-gracedb gwpy ligo.skymap
# Add the ROQ data to the image
RUN mkdir roq_basis \
&& cd roq_basis \
......
containers/v3-dockerfile-test-suite-python38
+ 18
− 11
View file @ cc9a73fd
......@@ -15,31 +15,34 @@ RUN /bin/bash -c "source activate ${conda_env}"
RUN conda info
RUN python --version
# Install pymultinest requirements
RUN apt-get update --allow-releaseinfo-change
RUN apt-get install -y libblas3 libblas-dev liblapack3 liblapack-dev \
libatlas3-base libatlas-base-dev cmake build-essential gfortran
# Install conda-installable programs
RUN conda install -n ${conda_env} -y matplotlib numpy scipy pandas astropy flake8 mock
RUN conda install -n ${conda_env} -c anaconda coverage configargparse future
# Install conda-forge-installable programs
RUN conda install -n ${conda_env} -c conda-forge black ligo-gracedb gwpy lalsuite ligo.skymap pytest-cov deepdish arviz
RUN conda install -n ${conda_env} -c conda-forge black pytest-cov deepdish arviz
# Install pip-requirements
RUN pip install --upgrade pip
RUN pip install --upgrade setuptools coverage-badge
RUN pip install --upgrade setuptools coverage-badge parameterized
# Install documentation requirements
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner lalsuite theano healpy cython tables
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 kombine dnest4 nessai zeus-mcmc
RUN pip install corner theano healpy cython tables
RUN conda install -n ${conda_env} -c conda-forge dynesty emcee nestle ptemcee
RUN conda install -n ${conda_env} -c conda-forge pymultinest ultranest
RUN conda install -n ${conda_env} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
RUN conda install -n ${conda_env} -c conda-forge pytorch
RUN pip install nessai
# Install Polychord
RUN apt-get update --allow-releaseinfo-change
RUN apt-get install -y build-essential
RUN apt-get install -y libblas3 libblas-dev
RUN apt-get install -y liblapack3 liblapack-dev
RUN apt-get install -y libatlas3-base libatlas-base-dev
RUN apt-get install -y gfortran
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && python setup.py --no-mpi install)
......@@ -47,6 +50,10 @@ RUN git clone https://github.com/PolyChord/PolyChordLite.git \
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
&& (cd PTMCMCSampler && python setup.py install)
# Install GW packages
RUN conda install -n ${conda_env} -c conda-forge python-lalsimulation
RUN pip install ligo-gracedb gwpy ligo.skymap
# Add the ROQ data to the image
RUN mkdir roq_basis \
&& cd roq_basis \
......
containers/v3-dockerfile-test-suite-python39
+ 18
− 11
View file @ cc9a73fd
......@@ -15,31 +15,34 @@ RUN /bin/bash -c "source activate ${conda_env}"
RUN conda info
RUN python --version
# Install pymultinest requirements
RUN apt-get update --allow-releaseinfo-change
RUN apt-get install -y libblas3 libblas-dev liblapack3 liblapack-dev \
libatlas3-base libatlas-base-dev cmake build-essential gfortran
# Install conda-installable programs
RUN conda install -n ${conda_env} -y matplotlib numpy scipy pandas astropy flake8 mock
RUN conda install -n ${conda_env} -c anaconda coverage configargparse future
# Install conda-forge-installable programs
RUN conda install -n ${conda_env} -c conda-forge black ligo-gracedb gwpy lalsuite ligo.skymap pytest-cov deepdish arviz
RUN conda install -n ${conda_env} -c conda-forge black pytest-cov deepdish arviz
# Install pip-requirements
RUN pip install --upgrade pip
RUN pip install --upgrade setuptools coverage-badge
RUN pip install --upgrade setuptools coverage-badge parameterized
# Install documentation requirements
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner lalsuite theano healpy cython tables
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 kombine dnest4 nessai zeus-mcmc
RUN pip install corner theano healpy cython tables
RUN conda install -n ${conda_env} -c conda-forge dynesty emcee nestle ptemcee
RUN conda install -n ${conda_env} -c conda-forge pymultinest ultranest
RUN conda install -n ${conda_env} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
RUN conda install -n ${conda_env} -c conda-forge pytorch
RUN pip install nessai
# Install Polychord
RUN apt-get update --allow-releaseinfo-change
RUN apt-get install -y build-essential
RUN apt-get install -y libblas3 libblas-dev
RUN apt-get install -y liblapack3 liblapack-dev
RUN apt-get install -y libatlas3-base libatlas-base-dev
RUN apt-get install -y gfortran
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && python setup.py --no-mpi install)
......@@ -47,6 +50,10 @@ RUN git clone https://github.com/PolyChord/PolyChordLite.git \
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
&& (cd PTMCMCSampler && python setup.py install)
# Install GW packages
RUN conda install -n ${conda_env} -c conda-forge python-lalsimulation
RUN pip install ligo-gracedb gwpy ligo.skymap
# Add the ROQ data to the image
RUN mkdir roq_basis \
&& cd roq_basis \
......
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