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lscsoft
bilby
Commits
f15d46d4
Commit
f15d46d4
authored
6 years ago
by
Matthew Pitkin
Committed by
Moritz
5 years ago
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Change how errors are combined
parent
41565ff6
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1 merge request
!459
Combining results
Changes
1
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1 changed file
bilby/core/result.py
+12
-7
12 additions, 7 deletions
bilby/core/result.py
with
12 additions
and
7 deletions
bilby/core/result.py
+
12
−
7
View file @
f15d46d4
...
...
@@ -1311,8 +1311,8 @@ class ResultList(object):
if
not
np
.
all
([
res
.
nested_samples
is
not
None
for
res
in
self
]):
raise
ValueError
(
"
Cannot combine results: nested samples available
"
)
# all sets of nested samples
nests
=
[
res
.
nested_samples
is
not
None
for
res
in
self
]
#
lengths of
all sets of nested samples
len_
nests
=
[
len
(
res
.
nested_samples
)
is
not
None
for
res
in
self
]
# get number of live points from runs
try
:
...
...
@@ -1329,16 +1329,21 @@ class ResultList(object):
result
.
log_evidence
=
log_evidence
if
result
.
use_ratio
:
result
.
log_bayes_factor
=
log_evidence
result
.
log_evidence
=
log_evidence
result
.
log_evidence
=
log_evidence
+
result
.
log_noise_evidence
else
:
result
.
log_bayes_factor
=
log_evidence
-
result
.
log_noise_evidence
if
np
.
insfinite
(
result
.
log_evidence_err
):
# standard error on the mean
result
.
log_evidence_err
-=
0.5
*
np
.
log
(
len
(
self
))
# add errors in quadrature
log_errs
=
[
res
.
log_evidence_err
for
res
in
self
is
np
.
isfinite
(
res
.
log_evidence_err
)]
if
len
(
log_errs
)
>
0
:
log_err
=
2.
*
log_errs
[
0
]
for
err
in
log_errs
[
1
:]:
log_err
=
np
.
logaddexp
(
log_err
,
2.
*
err
)
result
.
log_evidence_err
=
0.5
*
log_err
-
np
.
log
(
len
(
self
))
# combine all nested samples (see cpnest nest2pos)
fracs
=
np
.
exp
(
log_evs
-
np
.
max
(
log_evs
))
# relative weights for each Result
Ns
=
[
fracs
[
i
]
/
len
(
nests
[
i
]
)
for
i
in
range
(
len
(
self
))]
Ns
=
[
fracs
[
i
]
/
len
_
nests
[
i
]
for
i
in
range
(
len
(
self
))]
fracs
=
[
n
/
np
.
max
(
nlives
)
for
n
in
Ns
]
# number of samples from each Result
# select samples from the individual posteriors
...
...
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