CHANGELOG.md

 # All notable changes will be documented in this file
 
+## [1.0.1] 2020-08-29
+
+Version 1.0.1 release of bilby
+
+### Added
+- Added an rcparams configuration for plotting (!832)
+- Added `chi_1` and `chi_2` parameters to default latex label dictionary (!841)
+- Allow output merged result file to be gzip or saved as a HDF5 file (!802)
+
+### Changes
+- Fixed first value in EOS cumulative integral(!860)
+- Fixed saving the number of likelihood evaluations (!848)
+- Likelihood condition is now strictly increasing (!846)
+- Fixed a minor issue with conditional priors that could cause unexpected behaviour in edge cases (!838)
+- Fixed `__repr__` method in the `FromFile` prior (!836)
+- Fixed an issue that caused problems for some users when plotting with a latex backend (!816)
+- Fixed bug that occured when min/max of interpolated priors was changed (!815)
+- Fixed time domain waveform epoch (!736)
+- Fixed time keeping in multinest (!830)
+- Now checks if marginalised priors were defined before marginalising (!829)
+- Fixed an issue with multivariate Gaussian prior (!822)
+- Various minor code improvements (!836)(!839)
+- Various minor bug fixes and improvements to the documentation (!820)(!823)(!837)
+- Various testing improvements (!833)(!847)(!855)(!852)
+
 ## [1.0.0] 2020-07-06
 
 Version 1.0 release of bilby

bilby/gw/eos/eos.py

@@ -76,33 +76,18 @@ class TabularEOS(object):
         self.pressure = table[:, 0]
         self.energy_density = table[:, 1]
 
-        # Store minimum pressure and energy density
         self.minimum_pressure = min(self.pressure)
         self.minimum_energy_density = min(self.energy_density)
         if (not self.check_monotonicity() and self.sampling_flag) or self.warning_flag:
-            # Not a monotonic or causal EOS, exiting.
             self.warning_flag = True
         else:
-            # plot analytic enthalpy
-
-            # interpolate *in log*
+            integrand = self.pressure / (self.energy_density + self.pressure)
+            self.pseudo_enthalpy = cumtrapz(integrand, np.log(self.pressure), initial=0) + integrand[0]
 
             self.interp_energy_density_from_pressure = CubicSpline(np.log10(self.pressure),
                                                                    np.log10(self.energy_density),
                                                                    )
 
-            self.pseudo_enthalpy = np.zeros(self.pressure.shape[0])
-
-            # construct arrays to do cumulative integral
-            dhdp = 1. / (self.energy_density + self.pressure)
-
-            num_int_arg = np.exp(np.log(self.pressure) + np.log(dhdp))
-
-            pseudo_enthalpy_0 = self.pressure[0] / (self.energy_density[0] + self.pressure[0])
-
-            self.pseudo_enthalpy = cumtrapz(num_int_arg, np.log(self.pressure), initial=pseudo_enthalpy_0)
-
-            # interpolate entropy related quantities *in log*
             self.interp_energy_density_from_pseudo_enthalpy = CubicSpline(np.log10(self.pseudo_enthalpy),
                                                                           np.log10(self.energy_density))
 
@@ -112,13 +97,10 @@ class TabularEOS(object):
             self.interp_pseudo_enthalpy_from_energy_density = CubicSpline(np.log10(self.energy_density),
                                                                           np.log10(self.pseudo_enthalpy))
 
-            # Create tables
             self.__construct_all_tables()
 
-            # Store minimum enthalpy
             self.minimum_pseudo_enthalpy = min(self.pseudo_enthalpy)
             if not self.check_causality() and self.sampling_flag:
-                # Finally, ensure the EOS is causal if sampling
                 self.warning_flag = True
 
     def __remove_leading_zero(self, table):

containers/Dockerfile-test-suite-python27

@@ -38,7 +38,7 @@ pytest-cov \
 coverage-badge
 
 # Install additional bilby requirements
-RUN pip install corner lalsuite astropy gwpy theano
+RUN pip install corner lalsuite astropy gwpy theano tables
 
 # Install samplers
 RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4

containers/Dockerfile-test-suite-python37

@@ -45,7 +45,7 @@ coverage-badge
 RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs
 
 # Install additional bilby requirements
-RUN pip install corner lalsuite astropy gwpy theano healpy
+RUN pip install corner lalsuite astropy gwpy theano healpy tables
 
 # Install samplers
 RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4

containers/v2-dockerfile-test-suite-python35

@@ -34,7 +34,7 @@ RUN pip install --upgrade setuptools coverage-badge
 RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
 
 # Install dependencies and samplers
-RUN pip install corner lalsuite theano healpy cython
+RUN pip install corner lalsuite theano healpy cython tables
 RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4
 
 # Install multinest

containers/v2-dockerfile-test-suite-python36

@@ -34,7 +34,7 @@ RUN pip install --upgrade setuptools coverage-badge
 RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
 
 # Install dependencies and samplers
-RUN pip install corner lalsuite theano healpy cython
+RUN pip install corner lalsuite theano healpy cython tables
 RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4
 
 # Install multinest

containers/v2-dockerfile-test-suite-python37

@@ -34,7 +34,7 @@ RUN pip install --upgrade setuptools coverage-badge
 RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
 
 # Install dependencies and samplers
-RUN pip install corner lalsuite theano healpy cython
+RUN pip install corner lalsuite theano healpy cython tables
 RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4
 
 # Install multinest

containers/v2-dockerfile-test-suite-python38

@@ -34,7 +34,7 @@ RUN pip install --upgrade setuptools coverage-badge
 RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
 
 # Install dependencies and samplers
-RUN pip install corner lalsuite theano healpy cython
+RUN pip install corner lalsuite theano healpy cython tables
 RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine ultranest dnest4
 
 # Install multinest

setup.py

@@ -64,7 +64,7 @@ def readfile(filename):
     return filecontents
 
 
-VERSION = '1.0.0'
+VERSION = '1.0.1'
 version_file = write_version_file(VERSION)
 long_description = get_long_description()
 

test/gw/sample_from_the_prior_test.py

@@ -41,7 +41,7 @@ class Test(unittest.TestCase):
         duration = 4.0
         sampling_frequency = 2048.0
         label = "full_15_parameters"
-        np.random.seed(8817023)
+        np.random.seed(8817020)
 
         waveform_arguments = dict(
             waveform_approximant="IMRPhenomPv2",