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MAINT: drop py38 support

Merged MAINT: drop py38 support
drop-py38 into master
Merged Colm Talbot requested to merge drop-py38 into master
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containers/v3-dockerfile-test-suite-python38 deleted 100644 → 0
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# This dockerfile is written automatically and should not be modified by hand.
FROM containers.ligo.org/docker/base:conda
LABEL name="bilby CI testing" \
maintainer="Gregory Ashton <gregory.ashton@ligo.org>"
RUN conda update -n base -c defaults conda
ENV conda_env python38
RUN conda create -n ${conda_env} python=3.8
RUN echo "source activate ${conda_env}" > ~/.bashrc
ENV PATH /opt/conda/envs/${conda_env}/bin:$PATH
RUN /bin/bash -c "source activate ${conda_env}"
RUN conda info
RUN python --version
# Install conda-installable programs
RUN conda install -n ${conda_env} -y matplotlib numpy scipy pandas astropy flake8
RUN conda install -n ${conda_env} -c anaconda coverage configargparse future dill
RUN conda install -n ${conda_env} -c conda-forge black pytest-cov deepdish arviz
# Install pip-requirements
RUN pip install --upgrade pip
RUN pip install --upgrade setuptools coverage-badge parameterized
# Install documentation requirements
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install testing requirements
RUN conda install -n ${conda_env} -c conda-forge scikit-image celerite george
# Install dependencies and samplers
RUN pip install corner healpy cython tables
RUN conda install -n ${conda_env} dynesty emcee nestle ptemcee pymultinest ultranest cpnest kombine dnest4 zeus-mcmc pytorch 'pymc>=4' nessai ptmcmcsampler -c conda-forge -c pytorch
# Install Polychord
RUN apt-get update --allow-releaseinfo-change
RUN apt-get install -y build-essential
RUN apt-get install -y libblas3 libblas-dev
RUN apt-get install -y liblapack3 liblapack-dev
RUN apt-get install -y libatlas3-base libatlas-base-dev
RUN apt-get install -y gfortran
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && python setup.py --no-mpi install)
# Install GW packages
RUN conda install -n ${conda_env} -c conda-forge python-lalsimulation bilby.cython pyseobnr
RUN pip install ligo-gracedb gwpy ligo.skymap
# Add the ROQ data to the image
RUN mkdir roq_basis \
&& cd roq_basis \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/B_linear.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/B_quadratic.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/fnodes_linear.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/fnodes_quadratic.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/params.dat \
&& wget https://git.ligo.org/soichiro.morisaki/roq_basis/raw/main/IMRPhenomD/16s_nospins/basis_addcal.hdf5 \
&& wget https://git.ligo.org/soichiro.morisaki/roq_basis/raw/main/IMRPhenomD/16s_nospins/basis_multiband_addcal.hdf5