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BUG: Make sure outdir is not ignored unnecessarily on manual saving of result file.

Alexandre Goettel requested to merge alexandresebastien.goettel/bilby:707-dont-ignore-outdir into master

Closes #707 Implemented behaviour is to ignore the filename's path information when outdir is specified, and thus store "[path]/filename" as "filename" in outdir. If outdir is not set, then the full path in filename is used.

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