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Fix up logging

Gregory Ashton requested to merge fix-up-logging into master

Closes #106 (closed)

General clean up of the logger setup. This makes the logger be called by default (hence no need to call setup_logger() everytime) and ensures output is no duplicated.

  • Checks if handlers already exist before adding them
  • Add option to turn on/off printing of version information (off by default)
  • Add call to setup_logger by default (with version information turned on by default)

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