WIP: Improve emcee
This branch has ballooned a little as I was working on it but I think the set of features is:
- apply a minimum ln likelihood when drawing points from the prior (default leaves behaviour unchanged)
- add
npool
andmap
properties to the base_sampler - support multiprocessing for
emcee
- add new diagnostic plots, similar to the plots for
ptemcee
, also a plot showing how the mean and variance of the log posterior over the ensemble evolve - calculate the burn_in using the mean and variance of the log posterior (see !842 (merged))
- use some more of the
emcee
moves - port some of these changes also into
kombine
andptemcee
- add periodic boundaries into
ptemcee
This should probably be broken down into pieces.
cc @gregory.ashton @bruce.edelman for ptemcee and kombine.
Merge request reports
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These look like great changes all around to me. I had been working on a branch bringing some of these functionalities into kombine already but you have completed a lot more than what I have so far. I'll clone this branch and test the kombine side of things tomorrow and if there is parts of my WIP branch not included here I'll submit a MR after this goes through.
added Sampling label
changed milestone to %Future
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