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Remove getenv

Colm Talbot requested to merge remove-getenv into master

This MR builds on !569 (merged) to allow us to run without the getenv=True option that is being removed from HTCondor.

The diff with !569 (merged) can be seen here.

  • The changes are most clear from the changes to the parser.
  • There are two new arguments --environment-variables and --getenv that can be used to pass variables that are then written directly into the submit files.
  • These also replace --disable-hdf5-locking.
  • To not break most workflows I set defaults in utils.py for important variables.
  • The same environment variables are sent to all jobs in the dag.
Edited by Colm Talbot

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