Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
GstLAL
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Iterations
Wiki
Requirements
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Container Registry
Model registry
Operate
Environments
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
lscsoft
GstLAL
Commits
773f87a5
Commit
773f87a5
authored
2 years ago
by
Shio Sakon
Committed by
Shio Sakon
2 years ago
Browse files
Options
Downloads
Patches
Plain Diff
doc/source/cbc_analysis.rst: updated tutorial with osg and icds gstlalcbc shared account info
parent
d0f7ed57
No related branches found
Branches containing commit
No related tags found
Tags containing commit
1 merge request
!303
Updated cbc offline configuration tutorial
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
doc/source/cbc_analysis.rst
+20
-4
20 additions, 4 deletions
doc/source/cbc_analysis.rst
with
20 additions
and
4 deletions
doc/source/cbc_analysis.rst
+
20
−
4
View file @
773f87a5
...
...
@@ -11,6 +11,13 @@ All the below steps assume a Singularity container with the GstLAL software
stack installed. Other methods of installation will follow a similar
procedure, however, with one caveat that workflows will not work on the
Open Science Grid (OSG).
For a dag on the OSG IGWN grid, you must use a Singularity container on
cvmfs, set the ``profile`` in ``config.yaml`` to ``osg`` and make sure
to submit the dag from a OSG node.
Otherwise the workflow is the same.
For ICDS gstlalcbc shared accounts, the ``env.sh`` contents much be changed
and instead of running ``$ X509_USER_PROXY=/path/to/x509_proxy ligo-proxy-init -p albert.einstein``
run ``source env.sh``. (Details are below.)
Running Workflows
^^^^^^^^^^^^^^^^^^
...
...
@@ -63,10 +70,9 @@ For example, to grab all the relevant files for a small BNS dag:
$ curl -O https://git.ligo.org/gstlal/offline-configuration/-/raw/main/configs/bns-small/config.yml
$ curl -O https://git.ligo.org/gstlal/offline-configuration/-/raw/main/env.sh
$ curl -O https://dcc.ligo.org/DocDB/0184/T2200318/002/gstlal_bank_small.xml.gz
$ curl -O https://dcc.ligo.org/DocDB/0184/T2200318/002/mass_model_small.h5
$ curl -O https://dcc.ligo.org/DocDB/0184/T2200318/002/H1L1-IDQ_TIMESERIES-1239641219-692847.h5
$ curl -O https://dcc.ligo.org/DocDB/0184/T2200318/002/inspiral_dtdphi_pdf.h5
$ conda activate igwn
$ dcc archive --archive-dir=. --files --i T2200318-v2
$ conda deactivate
Then move the template bank, mass model, idq file, and dtdphi file into their corresponding directories.
...
...
@@ -156,6 +162,7 @@ You can select which profile to use in the ``condor`` section:
condor:
profile: ldas
For a OSG IGWN grid run, use ``osg``.
To view which profiles are available, you can run:
.. code:: bash
...
...
@@ -196,6 +203,14 @@ to ensure you can get access to LIGO data:
Note that we are running this step outside of Singularity. This is because ``ligo-proxy-init``
is not installed within the image currently.
If you are running on the ICDS gstlalcbc shared account, do not run the command
above.
Instead, run:
.. code:: bash
$ source env.sh
Also update the configuration accordingly (if needed):
...
...
@@ -210,6 +225,7 @@ Finally, set up the rest of the workflow including the DAG for submission:
$ singularity exec -B $TMPDIR <image> make dag
If running on the OSG IGWN grid, make sure to submit the dags from the OSG node.
This should create condor DAGs for the workflow. Mounting a temporary directory
is important as some of the steps will leverage a temporary space to generate files.
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment