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Omp num threads force 1

Description

When running on a condor pool with dynamic slots (such as my test box at Glasgow) condor sets OMP_NUM_THREADS to whatever the value of RequestCPU is in the .sub file. This is too clever, since for the MPI MCMC jobs we only want 1 OpenMP thread, but multiple MPI processes. Annoyingly condor over-rides OMP_NUM_THREADS even when it's specified in the .sub file with environment = OMP_NUM_THREADS=1 A workaround is to set this in the wrapper script. This shouldn't affect the CIT cluster but may be responsible for problems on other clusters. There seems to be a race condition when using margdist with >1 OpenMP thread in MCMC.

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