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lalapps/src/pulsar/FITSTools: fix bugs in PAGER file handling logic

Karl Wette requested to merge (removed):fitstools-fix-pager into master

Unfortunately the changes to lalapps/src/pulsar/FITSTools merged in !30 (merged) contained some bugs; pclose() was not called when using the pager (which was called with popen()) so file output was not flushed correctly. This patch fixes these bugs.

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