Merge branch 'docs' into 'master'

corrected links to lscsoft, not james-clark

See merge request lscsoft/bayeswave!11

doc/INSTALLATION.md

@@ -172,9 +172,9 @@ to build and test code whenever a commit is made (see e.g., "latest PDF" for
 
 Here, we use the CI tools to automatically build and test BayesWave containers
 following every commit.  See
-[`.gitlab-ci.yml`](https://git.ligo.org/james-clark/bayeswave/blob/master/.gitlab-ci.yml)
+[`.gitlab-ci.yml`](https://git.ligo.org/lscsoft/bayeswave/blob/master/.gitlab-ci.yml)
 for the CI script and
-[`Dockerfile`](https://git.ligo.org/james-clark/bayeswave/blob/master/Dockerfile)
+[`Dockerfile`](https://git.ligo.org/lscsoft/bayeswave/blob/master/Dockerfile)
 for the container build instructions.
 
 ## Creating Your Own Docker Images
@@ -212,7 +212,7 @@ resource in one go.
 Note that detailed instructions for authentication can be found in the Registry
 item of the gitlab side-bar.
 
-In practice, this is handled most easily by the [CI script](https://git.ligo.org/james-clark/bayeswave/blob/master/.gitlab-ci.yml).
+In practice, this is handled most easily by the [CI script](https://git.ligo.org/lscsoft/bayeswave/blob/master/.gitlab-ci.yml).
 
 Alternatively, you may wish to deploy your images to dockerhub, which is
 basically github for docker images.  This makes them publicly available

doc/QUICKSTART.md

@@ -2,8 +2,8 @@
 
 Use this if you're too busy to read / follow the sprawling instructions at:
 
- * [Installation](https://git.ligo.org/james-clark/bayeswave/blob/master/doc/INSTALLATION.md)
- * [Running Analyses](https://git.ligo.org/james-clark/bayeswave/blob/master/doc/RUNNING.md)
+ * [Installation](https://git.ligo.org/lscsoft/bayeswave/blob/master/doc/INSTALLATION.md)
+ * [Running Analyses](https://git.ligo.org/lscsoft/bayeswave/blob/master/doc/RUNNING.md)
 
 ## Install BayesWave
 

doc/RUNNING.md

@@ -26,18 +26,18 @@ MCMC configuration.  The objective is to demonstrate the workflow, NOT a
 scientific result.  Please adjust the configuration file accordingly if you
 desire science.
 
-**Example directory:** This example lives in the repository [here](https://git.ligo.org/james-clark/bayeswave/tree/master/BayesWavePipe/examples/LDG-GW150914)
+**Example directory:** This example lives in the repository [here](https://git.ligo.org/lscsoft/bayeswave/tree/master/BayesWavePipe/examples/LDG-GW150914)
 
 This is the setup most LIGO users will be familiar with: clone a repository,
 build and install software, execute an analysis.
 
 Here, we assume you have compiled and installed an appropriate branch of
 BayesWave and BayesWavePipe. See
-[here](https://git.ligo.org/james-clark/bayeswave/blob/master/doc/INSTALLATION.md)
+[here](https://git.ligo.org/lscsoft/bayeswave/blob/master/doc/INSTALLATION.md)
 for installation information.
 
  1. Copy
-    [this](https://git.ligo.org/james-clark/bayeswave/blob/master/BayesWavePipe/examples/LDG-GW150914/LDG-GW150914.ini)
+    [this](https://git.ligo.org/lscsoft/bayeswave/blob/master/BayesWavePipe/examples/LDG-GW150914/LDG-GW150914.ini)
     configuration file to your working directory.
  1. Modify paths in the `[engine]` section to point at the desired version of
     the BayesWave executables and libraries.
@@ -56,7 +56,7 @@ for installation information.
 The configuration file specifies the various BayesWave commandline options, as
 well as things like condor memory requests, accounting tags etc.
 
- For convenience, this command is provided in [makework-LDG-GW150914.sh](https://git.ligo.org/james-clark/bayeswave/blob/master/BayesWavePipe/examples/LDG-GW150914/makework-LDG-GW150914.sh).
+ For convenience, this command is provided in [makework-LDG-GW150914.sh](https://git.ligo.org/lscsoft/bayeswave/blob/master/BayesWavePipe/examples/LDG-GW150914/makework-LDG-GW150914.sh).
 
 This sets up four condor jobs:
  1. `BayesWave`: main MCMC sampling.
@@ -81,7 +81,7 @@ That's it!  To start the analysis, simply follow the on-screen prompt:
 
 ## Analyze GW150914 Using A Container On The LDG
 
-**Example directory:** This example lives in the repository [here](https://git.ligo.org/james-clark/bayeswave/tree/master/BayesWavePipe/examples/LDG-GW150914-singularity)
+**Example directory:** This example lives in the repository [here](https://git.ligo.org/lscsoft/bayeswave/tree/master/BayesWavePipe/examples/LDG-GW150914-singularity)
 
 We now repeat the example above using a singularity container.  A full
 discussion of containerization is (well) beyond the scope of this document but
@@ -110,13 +110,13 @@ configuration file and point at the correct executables:
  ```
 
 where the `[engine]` section of
-[LDG-GW150914-singularity.ini](https://git.ligo.org/james-clark/bayeswave/blob/master/BayesWavePipe/examples/LDG-GW150914-singularity/LDG-GW150914-singularity.ini)
+[LDG-GW150914-singularity.ini](https://git.ligo.org/lscsoft/bayeswave/blob/master/BayesWavePipe/examples/LDG-GW150914-singularity/LDG-GW150914-singularity.ini)
 now contains the `use-singularity` option and  the path to the desired
 singularity image:
 
 ```
 use-singularity=
-singularity="/cvmfs/ligo-containers.opensciencegrid.org/james-clark/bayeswave:master"
+singularity="/cvmfs/ligo-containers.opensciencegrid.org/lscsoft/bayeswave:master"
 ```
 
 **Important Note**
@@ -155,14 +155,14 @@ to access frame data.  To run a singularity job which reads frames at CIT
 singularity exec \
     --writable \
     --bind /hdfs \
-    /cvmfs/ligo-containers.opensciencegrid.org/james-clark/bayeswave:master \
+    /cvmfs/ligo-containers.opensciencegrid.org/lscsoft/bayeswave:master \
     /opt/bayeswave/bin/BayesWave "$@"
 ```
 
 ## Analyze GW150914 On The OSG
 
 **Example directory:** This example lives in the repository
-[here](https://git.ligo.org/james-clark/bayeswave/tree/master/BayesWavePipe/examples/OSG-GW150914-singularity).
+[here](https://git.ligo.org/lscsoft/bayeswave/tree/master/BayesWavePipe/examples/OSG-GW150914-singularity).
 To add some variety, we'll now generate a workflow for 100 GPS times, rather
 than a single follow-up.  The times are given in the text file
 [times.txt](https://git.ligo.org/jameacs-clark/bayeswave/blob/master/BayesWavePipe/examples/OSG-GW150914-singularity/times.txt).