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Michael William Coughlin
GraceDB Server
Commits
a1ad2f68
Commit
a1ad2f68
authored
6 years ago
by
Tanner Prestegard
Committed by
GraceDB
6 years ago
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adding query parsing for superevents
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600194e9
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gracedb/superevents/query.py
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gracedb/superevents/query.py
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a1ad2f68
from
django.db.models
import
Q
from
django.db.models.query
import
QuerySet
from
core.utils
import
letters_to_int
from
events.models
import
Group
,
Pipeline
,
Search
,
Label
# (weak) natural language time parsing.
from
events.nltime
import
nlTimeExpression
as
nltime_
from
events.query_utils
import
maybeRange
,
getLabelQ
,
RUN_MAP
from
.models
import
Superevent
import
datetime
import
pytz
from
pyparsing
import
Word
,
nums
,
Literal
,
CaselessLiteral
,
delimitedList
,
\
Suppress
,
QuotedString
,
Keyword
,
Combine
,
Or
,
Optional
,
OneOrMore
,
\
ZeroOrMore
,
alphas
,
alphanums
,
Regex
,
opAssoc
,
operatorPrecedence
,
\
oneOf
,
stringStart
,
stringEnd
,
FollowedBy
,
ParseResults
,
ParseException
,
\
CaselessKeyword
# Function for parsing matched superevent ID tokens
def
parse_superevent_id
(
name
,
toks
,
filter_prefix
=
None
):
prefix
=
toks
.
get
(
'
prefix
'
,
None
)
date
=
toks
.
get
(
'
date
'
)
suffix
=
toks
.
get
(
'
suffix
'
,
None
)
# Convert date to datetime object
date_dt
=
datetime
.
datetime
.
strptime
(
date
,
Superevent
.
DATE_STR_FMT
).
date
()
# Useful function
fp
=
lambda
field
:
(
filter_prefix
+
"
__
"
+
field
)
if
filter_prefix
\
else
field
# Construct Q object
fullQ
=
Q
(
**
{
fp
(
"
t_0_date
"
):
date_dt
})
if
prefix
and
prefix
==
Superevent
.
GW_ID_PREFIX
:
fullQ
&=
Q
(
**
{
fp
(
"
is_gw
"
):
True
})
if
not
suffix
:
fullQ
&=
Q
(
**
{
fp
(
"
gw_date_number
"
):
1
})
else
:
fullQ
&=
Q
(
**
{
fp
(
"
gw_date_number
"
):
letters_to_int
(
suffix
)})
else
:
if
prefix
and
prefix
==
Superevent
.
ALERT_ID_PREFIX
:
fullQ
&=
Q
(
**
{
fp
(
"
alert_sent
"
):
True
})
if
not
suffix
:
if
not
prefix
:
fullQ
&=
(
Q
(
**
{
fp
(
"
base_date_number
"
):
1
})
|
Q
(
**
{
fp
(
"
gw_date_number
"
):
1
}))
else
:
fullQ
&=
Q
(
**
{
fp
(
"
base_date_number
"
):
1
})
else
:
s
=
letters_to_int
(
suffix
)
if
not
prefix
:
fullQ
&=
(
Q
(
**
{
fp
(
"
base_date_number
"
):
s
})
|
Q
(
**
{
fp
(
"
gw_date_number
"
):
s
}))
else
:
fullQ
&=
Q
(
**
{
fp
(
"
base_date_number
"
):
s
})
return
(
name
,
fullQ
)
# Construct an expression for date-based superevent ids
superevent_prefix
=
Optional
(
Or
([
CaselessLiteral
(
pref
)
for
pref
in
Superevent
.
DEFAULT_ID_PREFIX
,
Superevent
.
ALERT_ID_PREFIX
,
Superevent
.
GW_ID_PREFIX
])).
setResultsName
(
'
prefix
'
)
superevent_date
=
Word
(
nums
,
exact
=
6
).
setResultsName
(
'
date
'
)
superevent_suffix
=
Optional
(
Word
(
alphas
)).
setResultsName
(
'
suffix
'
)
superevent_expr
=
Combine
(
superevent_prefix
+
superevent_date
+
superevent_suffix
)
# Dict of queryable parameters which are compiled into a pyparsing
# expression below
parameter_dicts
=
{
# id: S180506a OR superevent_id: GWA180517
'
superevent_id
'
:
{
'
keyword
'
:
[
'
id
'
,
'
superevent_id
'
],
'
keywordOptional
'
:
True
,
'
value
'
:
superevent_expr
,
'
doRange
'
:
False
,
'
parseAction
'
:
lambda
toks
:
parse_superevent_id
(
"
superevent_id
"
,
toks
,
filter_prefix
=
None
),
},
# runid: O2
'
runid
'
:
{
'
keyword
'
:
'
runid
'
,
'
keywordOptional
'
:
True
,
'
value
'
:
Or
(
map
(
CaselessLiteral
,
RUN_MAP
.
keys
())).
setName
(
"
run id
"
),
'
doRange
'
:
False
,
'
parseAction
'
:
lambda
toks
:
(
"
t_0
"
,
Q
(
t_0__range
=
RUN_MAP
[
toks
[
0
]])),
},
# t_0: 123456.0987 OR gpstime: 123456.0987
'
t_0
'
:
{
'
keyword
'
:
[
'
t_0
'
,
'
gpstime
'
],
'
keywordOptional
'
:
True
,
'
value
'
:
Word
(
nums
+
'
.
'
),
'
doRange
'
:
True
,
'
parseAction
'
:
maybeRange
(
'
t_0
'
),
},
# t_start: 123456.0987
'
t_start
'
:
{
'
keyword
'
:
'
t_start
'
,
'
keywordOptional
'
:
False
,
'
value
'
:
Word
(
nums
+
'
.
'
),
'
doRange
'
:
True
,
'
parseAction
'
:
maybeRange
(
'
t_start
'
),
},
# t_end: 123456.0987
'
t_end
'
:
{
'
keyword
'
:
'
t_end
'
,
'
keywordOptional
'
:
False
,
'
value
'
:
Word
(
nums
+
'
.
'
),
'
doRange
'
:
True
,
'
parseAction
'
:
maybeRange
(
'
t_end
'
),
},
# "albert.einstein@ligo.org OR submitter: "albert.einstein@ligo.org"
'
submitter
'
:
{
'
keyword
'
:
'
submitter
'
,
'
keywordOptional
'
:
True
,
'
value
'
:
QuotedString
(
'"'
),
'
parseAction
'
:
lambda
toks
:
(
"
submitter
"
,
Q
(
submitter__username__icontains
=
toks
[
0
])
|
Q
(
submitter_last_name__icontains
=
toks
[
0
])),
},
# preferred_event: G123456, preferred_event: G1234 .. G2234
'
preferred_event
'
:
{
'
keyword
'
:
'
preferred_event
'
,
'
keywordOptional
'
:
False
,
'
value
'
:
Suppress
(
Word
(
"
GHMTghmt
"
,
exact
=
1
))
+
Word
(
nums
),
'
doRange
'
:
True
,
'
parseAction
'
:
maybeRange
(
"
preferred_event
"
,
dbname
=
"
preferred_event__id
"
),
},
# event: G1234, event: G1234 .. G2234
'
event
'
:
{
'
keyword
'
:
'
event
'
,
'
keywordOptional
'
:
False
,
'
value
'
:
Suppress
(
Word
(
"
EGHMTeghmt
"
,
exact
=
1
))
+
Word
(
nums
),
'
doRange
'
:
True
,
'
parseAction
'
:
maybeRange
(
"
event
"
,
dbname
=
"
events__id
"
),
},
# is_gw: true|false (case-insensitive)
'
is_gw
'
:
{
'
keyword
'
:
'
is_gw
'
,
'
keywordOptional
'
:
False
,
'
value
'
:
Or
([
CaselessLiteral
(
b
)
for
b
in
[
'
true
'
,
'
false
'
]]),
'
parseAction
'
:
lambda
toks
:
(
"
is_gw
"
,
Q
(
is_gw
=
(
toks
[
0
]
==
"
true
"
))),
},
# created: yesterday .. now (uses events.nltime.nltimeExpression)
'
created_nl
'
:
{
'
keyword
'
:
'
created
'
,
'
keywordOptional
'
:
True
,
'
doRange
'
:
True
,
'
value
'
:
nltime_
.
setParseAction
(
lambda
toks
:
toks
[
"
calculatedTime
"
]),
'
parseAction
'
:
maybeRange
(
"
created
"
),
},
# created: YYYY-MM-DD HH:MM:SS (time = optional, can do range too)
'
created_dt
'
:
{
'
keyword
'
:
'
created
'
,
'
keywordOptional
'
:
True
,
'
doRange
'
:
True
,
'
value
'
:
Combine
(
Word
(
nums
,
exact
=
4
)
+
Suppress
(
'
-
'
)
+
\
Word
(
nums
,
exact
=
2
)
+
Suppress
(
'
-
'
)
+
Word
(
nums
,
exact
=
2
)
+
\
Optional
(
Word
(
nums
,
exact
=
2
)
+
Suppress
(
'
:
'
)
+
\
Word
(
nums
,
exact
=
2
)
+
Optional
(
Suppress
(
'
:
'
)
+
\
Word
(
nums
,
exact
=
2
)))).
setParseAction
(
lambda
toks
:
pytz
.
utc
.
localize
(
datetime
.
datetime
(
*
(
map
(
int
,
toks
))))),
'
parseAction
'
:
maybeRange
(
"
created
"
),
}
}
# Compile a list of expressions to try to match
expr_list
=
[]
for
k
,
p
in
parameter_dicts
.
iteritems
():
# Define val and set name
val
=
p
[
'
value
'
]
val
.
setName
(
k
)
# Add keyword. Format is keyword: value
if
isinstance
(
p
[
'
keyword
'
],
list
):
if
p
.
has_key
(
'
keywordOptional
'
)
and
p
[
'
keywordOptional
'
]:
keyword_list
=
[
Optional
(
Suppress
(
Keyword
(
k
+
"
:
"
)))
for
k
in
p
[
'
keyword
'
]]
else
:
keyword_list
=
[
Suppress
(
Keyword
(
k
+
"
:
"
))
for
k
in
p
[
'
keyword
'
]]
keyword
=
reduce
(
lambda
x
,
y
:
x
^
y
,
keyword_list
)
else
:
keyword
=
Suppress
(
Keyword
(
p
[
'
keyword
'
]
+
"
:
"
))
if
p
.
has_key
(
'
keywordOptional
'
)
and
p
[
'
keywordOptional
'
]:
keyword
=
Optional
(
keyword
)
# Add range with format: parameter .. parameter
if
p
.
has_key
(
'
doRange
'
)
and
p
[
'
doRange
'
]:
range_val
=
val
+
Suppress
(
"
..
"
)
+
val
val
^=
range_val
# Combine keyword and value into a single expression
full_expr
=
keyword
+
val
# Set parse action
full_expr
=
full_expr
.
setParseAction
(
p
[
'
parseAction
'
])
# Append to list of all expressions
expr_list
.
append
(
full_expr
)
# Compile a combined expression by Or-ing all of the individual expressions
combined_expr
=
Or
(
expr_list
)
def
parseSupereventQuery
(
s
):
# Clean the label-related parts of the query out of the query string.
labelQ
=
getLabelQ
()
s
=
labelQ
.
transformString
(
s
)
# A parser for the non-label-related remainder of the query string.
q
=
combined_expr
.
setName
(
"
query term
"
)
# For an empty query, return everything
# TODO: non-test superevents?
if
not
s
:
return
Q
()
#return ~Q(group__name="Test") & ~Q(search__name="MDC")
# Get matches
matches
=
(
stringStart
+
OneOrMore
(
q
)
+
stringEnd
).
parseString
(
s
).
asList
()
return
reduce
(
Q
.
__and__
,
[
m
[
1
]
for
m
in
matches
],
Q
())
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