DEPRECATE: remove polychord from testing

containers/dockerfile-template

@@ -13,17 +13,6 @@ RUN /bin/bash -c "source activate ${{conda_env}}"
 RUN mamba info
 RUN python --version
 
-# Install Polychord
-RUN apt-get update --allow-releaseinfo-change
-RUN apt-get install -y build-essential
-RUN apt-get install -y libblas3 libblas-dev
-RUN apt-get install -y liblapack3 liblapack-dev
-RUN apt-get install -y libatlas3-base libatlas-base-dev
-RUN apt-get install -y gfortran
-
-RUN git clone https://github.com/PolyChord/PolyChordLite.git \
-&& (cd PolyChordLite && python setup.py --no-mpi install)
-
 # Add the ROQ data to the image
 RUN mkdir roq_basis \
     && cd roq_basis \

containers/v3-dockerfile-test-suite-python310

@@ -15,17 +15,6 @@ RUN /bin/bash -c "source activate ${conda_env}"
 RUN mamba info
 RUN python --version
 
-# Install Polychord
-RUN apt-get update --allow-releaseinfo-change
-RUN apt-get install -y build-essential
-RUN apt-get install -y libblas3 libblas-dev
-RUN apt-get install -y liblapack3 liblapack-dev
-RUN apt-get install -y libatlas3-base libatlas-base-dev
-RUN apt-get install -y gfortran
-
-RUN git clone https://github.com/PolyChord/PolyChordLite.git \
-&& (cd PolyChordLite && python setup.py --no-mpi install)
-
 # Add the ROQ data to the image
 RUN mkdir roq_basis \
     && cd roq_basis \

containers/v3-dockerfile-test-suite-python39

@@ -15,17 +15,6 @@ RUN /bin/bash -c "source activate ${conda_env}"
 RUN mamba info
 RUN python --version
 
-# Install Polychord
-RUN apt-get update --allow-releaseinfo-change
-RUN apt-get install -y build-essential
-RUN apt-get install -y libblas3 libblas-dev
-RUN apt-get install -y liblapack3 liblapack-dev
-RUN apt-get install -y libatlas3-base libatlas-base-dev
-RUN apt-get install -y gfortran
-
-RUN git clone https://github.com/PolyChord/PolyChordLite.git \
-&& (cd PolyChordLite && python setup.py --no-mpi install)
-
 # Add the ROQ data to the image
 RUN mkdir roq_basis \
     && cd roq_basis \

test/core/sampler/polychord_test.py

-import unittest
-from unittest.mock import MagicMock
-
-import numpy as np
-
-import bilby
-
-
-class TestPolyChord(unittest.TestCase):
-    def setUp(self):
-        self.likelihood = MagicMock()
-        self.priors = bilby.core.prior.PriorDict(
-            dict(a=bilby.core.prior.Uniform(0, 1), b=bilby.core.prior.Uniform(0, 1))
-        )
-        self.sampler = bilby.core.sampler.PyPolyChord(
-            self.likelihood,
-            self.priors,
-            outdir="outdir",
-            label="polychord",
-            use_ratio=False,
-            plot=False,
-            skip_import_verification=True,
-        )
-
-    def tearDown(self):
-        del self.likelihood
-        del self.priors
-        del self.sampler
-
-    def test_default_kwargs(self):
-        expected = dict(
-            use_polychord_defaults=False,
-            nlive=self.sampler.ndim * 25,
-            num_repeats=self.sampler.ndim * 5,
-            nprior=-1,
-            do_clustering=True,
-            feedback=1,
-            precision_criterion=0.001,
-            logzero=-1e30,
-            max_ndead=-1,
-            boost_posterior=0.0,
-            posteriors=True,
-            equals=True,
-            cluster_posteriors=True,
-            write_resume=True,
-            write_paramnames=False,
-            read_resume=True,
-            write_stats=True,
-            write_live=True,
-            write_dead=True,
-            write_prior=True,
-            compression_factor=np.exp(-1),
-            base_dir="outdir",
-            file_root="polychord",
-            seed=-1,
-            grade_dims=list([self.sampler.ndim]),
-            grade_frac=list([1.0] * len([self.sampler.ndim])),
-            nlives={},
-        )
-        self.sampler._setup_dynamic_defaults()
-        self.assertDictEqual(expected, self.sampler.kwargs)
-
-    def test_translate_kwargs(self):
-        expected = dict(
-            use_polychord_defaults=False,
-            nlive=123,
-            num_repeats=self.sampler.ndim * 5,
-            nprior=-1,
-            do_clustering=True,
-            feedback=1,
-            precision_criterion=0.001,
-            logzero=-1e30,
-            max_ndead=-1,
-            boost_posterior=0.0,
-            posteriors=True,
-            equals=True,
-            cluster_posteriors=True,
-            write_resume=True,
-            write_paramnames=False,
-            read_resume=True,
-            write_stats=True,
-            write_live=True,
-            write_dead=True,
-            write_prior=True,
-            compression_factor=np.exp(-1),
-            base_dir="outdir",
-            file_root="polychord",
-            seed=-1,
-            grade_dims=list([self.sampler.ndim]),
-            grade_frac=list([1.0] * len([self.sampler.ndim])),
-            nlives={},
-        )
-        self.sampler._setup_dynamic_defaults()
-        for equiv in bilby.core.sampler.base_sampler.NestedSampler.npoints_equiv_kwargs:
-            new_kwargs = self.sampler.kwargs.copy()
-            del new_kwargs["nlive"]
-            new_kwargs[equiv] = 123
-            self.sampler.kwargs = new_kwargs
-            self.assertDictEqual(expected, self.sampler.kwargs)
-
-
-if __name__ == "__main__":
-    unittest.main()

test/integration/sampler_run_test.py

@@ -55,7 +55,6 @@ _sampler_kwargs = dict(
     PTMCMCSampler=dict(Niter=101, burn=100, covUpdate=100, isave=100),
     pymc=dict(draws=50, tune=50, n_init=250),
     pymultinest=dict(nlive=100),
-    pypolychord=dict(nlive=100),
     ultranest=dict(nlive=100, temporary_directory=False),
     zeus=dict(nwalkers=10, iterations=100)
 )
@@ -65,7 +64,7 @@ sampler_imports = dict(
     dynamic_dynesty="dynesty"
 )
 
-no_pool_test = ["dnest4", "pymultinest", "nestle", "ptmcmcsampler", "pypolychord", "ultranest", "pymc"]
+no_pool_test = ["dnest4", "pymultinest", "nestle", "ptmcmcsampler", "ultranest", "pymc"]
 
 
 def slow_func(x, m, c):