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Fixed working directory issue and a mistyped variable

VINAYA VALSAN requested to merge vinaya.valsan/rapidpe-rift-pipe:rapidpe-rift_pipe into rapidpe-rift_pipe
  1. fixed path to injection run dir
    • os.chdir was only being called in some scenarios -- fixed by moving before the if statement
  2. fixed use_skymap option
    • an attribute was attempting to be accessed without an intermediary
Edited by Daniel Wysocki

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