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Run autogen.sh if using autotools and don't change permission if file is a symbolic link

Rhys Poulton requested to merge rhys.poulton/PackageBuild:add_autogen into master

Since autotools use autogen.sh to generate a configure file I have added running of the autogen.sh file if it exists.

In addition, autotools seems to generate symbolic links to system files, which permissions cannot be changed so a check has been added to not change the permission if the file is a symbolic link

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