lalpulsar/bin: add Doxygen structuring commands for Python applications

Closes #756

See merge request lscsoft/lalsuite!2367

- Closes lscsoft/lalsuite#756

Enable the condor file transfer system for the workflow created by lalpulsar_MakeSFTDAG.py

See merge request lscsoft/lalsuite!2359

Fix rare bug in lalpulsar_MakeSFTs when frame end time coincides with end time of SFT

See merge request lscsoft/lalsuite!2362

LAL: skip tests that require ligo.lw due to circular dependency

See merge request lscsoft/lalsuite!2365

- Ensures that "make check" can be run locally

Set standard SFT window choice in lalpulsar_MakeSFTDAG

Closes #766

See merge request lscsoft/lalsuite!2363

SWIG 4.3.0 compatibility fixes

See merge request lscsoft/lalsuite!2364

- New behaviour of SWIG_Python_AppendOutput() makes it more difficult
  to not add XLAL error code at start of output argument list
- Instead, always add XLAL error code at start of output argument list,
  them remove it later in "newfree" typemap

- As of SWIG 4.3.0 "value" attribute contains quote characters
- "stringval" attribute appears to still contain the raw string

LALPulsar: add PiecewiseSearch code

See merge request lscsoft/lalsuite!2330

Improve documentation and argument checking for lalpulsar_MakeSFTs

Closes #763

See merge request lscsoft/lalsuite!2361

- Not available on all platforms

Benjamin Grace authored 4 years ago and Karl Wette committed 5 months ago

Squashed commit of the following:

commit d27574e029d13df0553bd0e5ff5546ae4e36b2f4
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Feb 15 10:47:38 2024 +1100

    Addition of BaseSeed to tbankdirectory

commit 4139c52d2ac2ff9ab8e2b1628cfe0d723dd94d38
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Feb 15 10:45:04 2024 +1100

    Addition of j to tbankdirectory

commit 679d35fc68475b818658203e2b97e2b2915b3e80
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Feb 15 10:38:44 2024 +1100

    Removal of redundant generation of SFT directory under certain conditions

commit a47cdad4d2dbd3681df776a4dffd581c37f21a1c
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Feb 14 16:31:36 2024 +1100

    Bug fix from last commit

commit b201b787629a2eb42cbca25aa9e31ac3ecfc633a
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Feb 14 16:12:44 2024 +1100

    Fixed bug in detector list initialisation

commit 52e7deb15da64de53fdf6ff78eaacc748381faf5
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Feb 12 11:52:01 2024 +1100

    Changes to path names and bug fix in sft_path_master

commit 94f78ace5bbf8768053df7f2b19947233f506cb0
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Feb 12 11:26:55 2024 +1100

    Changes to file names to include iterations, including detectors in .SetTBankParams(self)

commit 716bd2cf5c53bdf6a3164f35d851ad5a33a4047e
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Feb 12 11:08:12 2024 +1100

    Change to template files to include j parameter. Re-addition of sft_path parameter which was accidentally deleted

commit 9de3101c2251ece719de08dc15657abef42268ce
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Feb 12 10:45:26 2024 +1100

    General tidying, small bug fixes

commit 9f9c7b10193c3adcf09cd2514805e11d836c20a4
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Dec 6 10:41:56 2023 +1100

    Fixed bug where results files were being open and closed a large number of times

commit d5e1cfa5bbfbc531521bb361c52e595e71252c01
Author: Karl Wette <karl.wette@ligo.org>
Date:   Sat Dec 2 17:18:02 2023 +1100

    Remove accidentally committed files

commit 332c504fb97390073f61bb8c7860bda7ec5dab2d
Merge: b2f7738431 5cd2184f
Author: Karl Wette <karl.wette@ligo.org>
Date:   Sat Dec 2 16:37:54 2023 +1100

    Merge branch 'master' into PiecewiseModel

commit b2f7738431dba936dae27ac7ebe3695b782dac41
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Dec 1 10:30:58 2023 +1100

    Fixed bug where if doing a search a zero-signal was injected, which led to errors

commit 8906b987aa0641fba9648f6ee08c75a4bc4e8780
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Nov 29 15:15:52 2023 +1100

    Change to path variables

commit 930b13e76b479b8c41f4e88c5ebd7f078cf6d59d
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Nov 9 13:13:46 2023 +1100

    Bug fix with inject_data compatibility with other modes and options

commit 1522d04e36a1eb81af411a72585af64816c0c9f0
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Nov 6 14:58:15 2023 +1100

    Ability to now use simulated date with noise level equal to data SFT's

commit fe2c960dfbd8fc6f7ae4f25a2c8118152a4c2a00
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Nov 2 17:15:12 2023 +1100

    Fixed old bug with directory structure when --SFTFiles option was used.

commit da9e870a4d8d5fd9cdad533b06149881dabd7258
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Nov 2 16:09:17 2023 +1100

    Addition of option to calculate 2F* info exclusively without calculating det prob info

commit 41db1bad69946b91ded9d37155875daa0582b712
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Oct 31 10:56:39 2023 +1100

    Addition of option to create 2F histogram

commit 15b1b2004aa19dcd93d5e1b7260fa4f9b68edc9f
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Oct 23 10:47:48 2023 +1100

    Made detectors a part of tbank object

commit d8b6795aa6b651243ecad34d654a2b7d449c8f7d
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Oct 18 15:07:35 2023 +1100

    Bug in directory name

commit e6be03d15881948621b034e04254414e475163d5
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Oct 18 11:03:09 2023 +1100

    Typo in previous commit

commit f1851c8ef64c3e3d0afcafc0286e81117904dc37
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Oct 18 10:54:19 2023 +1100

    Change to tbankdirectory name to avoid race condition

commit ac1b9a4251db7967838ad7883e10f277ba115d76
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Oct 13 14:33:04 2023 +1100

    Addition of ability to inject signals into SFT files which already exist

commit 68e1aacfd5fa79577f3728485eb54cbf829e5ab0
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Sep 8 12:47:01 2023 +1000

    Increased SFT padding to resolve error message when running GW190425 search code

commit da6a9f1c2ec2a70d141a491a6f28ab4fa64a02b4
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Sep 6 11:14:02 2023 +1000

    Bug fix, mispelt GW190425

commit 179a65408a6914399a7d624b17ca553f3b7d4fab
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Sep 6 10:39:33 2023 +1000

    Bug fix

commit e3468dd080283e410a9356c8333e8c2bc8cad8e5
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Sep 5 17:16:58 2023 +1000

    Removal of hacky redo and addition of GW190425 sky positions

commit e2c553ac9e45b21b5f2c0cbd51a45ac146d6b569
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Sep 5 15:41:26 2023 +1000

    Bug fixes to hacky redo function

commit b4f8205624302b9ee7365ef24b039e616c8a3e60
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Sep 5 14:50:44 2023 +1000

    Addition of hacky_redo function to get individual 2F values per detector for results

commit d2f6b9511aa7e10a64051cb121e825c1d5288f5b
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Sep 4 16:46:49 2023 +1000

    Data saved to file now includes individual 2F's per detector

commit c2faeb459e46f6b784c42d4bb1b2c30230787df1
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Sep 1 17:41:34 2023 +1000

    Changes to file names

commit 9c53420a2b79acb136c26a1ba3d5b2128ad46a51
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Sep 1 17:32:07 2023 +1000

    Bug fix to tbank attributes

commit 025ef360fdab359ab36e14aab2d47643c1771055
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Sep 1 17:17:17 2023 +1000

    Changes to the toString() Method to make it more compact

commit 31410a297d1b424d85ca516dfc3e24276779c44e
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Aug 22 11:12:14 2023 +1000

    Changed paths to noise curve data and SFTs to be included as part of the tbank object as well as possibility to have them as command line input

commit 735975535a05152d9aad6939b1da0a6ef09a3d4b
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Aug 18 14:20:43 2023 +1000

    Randomising cosi, phi0, psi and including Alpha and Delta as tbank parameters

commit a8b9cc56039e7e8b7b8b0647de7ecda231f08e46
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Aug 16 14:24:36 2023 +1000

    Bug fix with how knots are decided which caused a race condition

commit 10118cdd375c3d788058bc04d4fecb4d4f60fa41
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Aug 16 13:52:44 2023 +1000

    Bug fixes to previous commit

commit ca0bc980b3a77f04671bce3ef859fddd0c69d124
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Aug 16 13:40:18 2023 +1000

    Changes to file naming

commit 4d213a87c71d073a307a4220fa505b372b057fc1
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Aug 16 11:59:38 2023 +1000

    Change to tbank.toString() method to include more decimal places

commit 559ca93ec3d01fef5ecfac0fb5def24b829e1970
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Aug 15 14:30:21 2023 +1000

    Addition of freq_bands user input. Changes to saved output in 'search' mode. Code is search ready

commit fd1e921dea0bb93a918079a3c1238830a16adb42
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Aug 14 12:20:24 2023 +1000

    Bug fix in mis_hist option

commit 976ff3a155e31628352b69d0a714cafafa5fade8
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Aug 14 12:05:02 2023 +1000

    Changes to tstart input and file patterns for reading in GW170817 SFTs

commit c6f8bd1fdbd8978b68c5309c925cef0c875cc654
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Aug 9 10:20:24 2023 +1000

    Small change to allow for user input j to change knots. Used for rapid testing on OzSTAR, this version should not be used for other

commit 2f57adbf3126a0c960b6e584f45785373e6ea86d
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Aug 7 15:07:42 2023 +1000

    Changes to how data is written. GW170817 data added, however paths to access data needs adjustment and is buggy. Still works if not requesting that data

commit ac0492a3772940328a5b6ac120f3f3b2ef0bc528
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Jul 25 15:58:46 2023 +1000

    Temporary addition to save both metric and 2F mismatch definitions

commit a3b6ce2cd25cc4030d1fcecc97e2eb04d8b24645
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Jun 23 15:05:41 2023 +1000

    Changes to mismatch definition option

commit 60e6fff012ec003e7ce676b1ee38b0ad662583c4
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Jun 23 14:27:03 2023 +1000

    Addition of comments and changes to output and searh modes

commit 2402bccf90dcfb21c7b0673166bd8b322fa5d32b
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jun 22 11:30:55 2023 +1000

    Change to how temps_per_sec output is written to files

commit 8aa65c69968886a8bff445f8fb26153fc95cb0e9
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jun 22 11:23:43 2023 +1000

    Fixing another memory leak

commit 181cde44d19519925c4d5fc8efe68007bb879c05
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jun 22 11:11:10 2023 +1000

    Fixing memory leak

commit 8da554892f0a69bdf86165012afee1079aa694c9
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Jun 21 15:51:28 2023 +1000

    Changes to temp_per_sec option output

commit 873493f9c33407c26e500e6ba3d4b2ce62c3d601
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Jun 21 13:40:49 2023 +1000

    Small additions to allow for code to return template counts and templates per second computed

commit 875fd92cca39c1122664d56c0fab829352216412
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Jun 16 14:24:27 2023 +1000

    Minor Bug Fixes

commit 7f22bb0e6d9ef61f33caf549292360c345de42c5
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Jun 16 12:13:36 2023 +1000

    Change to PWF output

commit 69d18e30f542341219260dae4ce15c490f288186
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jun 15 12:21:28 2023 +1000

    Bug fix for noise curve data when using SFTFiles

commit 7244695e05e73edd3ff82b647f0cd61f97a985c2
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jun 15 11:32:57 2023 +1000

    Addition of OzSTAR path for noise curve data

commit 26cb65fbe6957d18a637cc9ba35ce24efe91d48e
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Jun 14 16:32:02 2023 +1000

    Corrections to available noise inputs. Multiple detector capability added and noise curves for each detector added

commit faf17d8116015f36ccfadc8b60c71fcc10d2556e
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Jun 12 19:23:42 2023 +1000

    Random signal can now be chosen as random template

commit 2b926f7cbeca7c0b3af513da6d5b5b53509f600e
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed May 31 15:44:10 2023 +1000

    Threshold 2F is now calculated by saving gathered 2F's in histogram, rather than by expanding tempheap

commit ccd19c3cbead0a3c6aee977920128dc8717dc25a
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue May 23 12:17:00 2023 +1000

    Changes to code print outs

commit 7f14c01bd9602758511dbb5ab4683e2c01f0628a
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri May 19 14:28:43 2023 +1000

    Addition of k value alteration. Other minor changes

commit 27292c539b9a6f744644bdba78d3f576e3e4bce4
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu May 4 15:40:13 2023 +1000

    Changes to out put of PWF and file writing. No longer any specific threshold_2F option

commit efd4feadfc905edbf36db2a5ff08805f1644c3d8
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu May 4 12:15:24 2023 +1000

    Fixed bug where h0 remained unchanged when SFTFiles was true

commit 29b0b8acd3ea09bf9c81d1a43a1c2494b665836a
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon May 1 13:32:58 2023 +1000

    Correction to Threshold Calculation

commit 5392c494ac7ec7c10b1e3c1f120e5ffbdce9e8ce
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Apr 27 16:13:07 2023 +1000

    Minor edits to flags

commit 55d6d6cb67852bf0b449200e5e0e1d5375de0d2a
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Apr 26 16:04:20 2023 +1000

    Re-addition of padding flag options

commit b0a9dcc58698c1bfb71d8b4bd59b5287b2dcfdd8
Author: Benjamin.Grace <Benjamin.Grace@ligo.org>
Date:   Fri Apr 14 10:41:44 2023 +1000

    Changes to allow for detection probability calculations

commit 159e6f535cc34e9f56fabc8f3fef302693830551
Author: Benjamin.Grace <Benjamin.Grace@ligo.org>
Date:   Thu Mar 23 13:10:09 2023 +1100

    Updates, changes to file names and random seeds

commit 9db9e220d5bb860fc079064df9583283dee5ac54
Author: Benjamin.Grace <Benjamin.Grace@ligo.org>
Date:   Tue Mar 21 14:19:36 2023 +1100

    Fixing MakeFile path

commit c24c11bc0e1b579c5a28ec1b24396146294356a7
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Mar 16 14:40:49 2023 +1100

    Changes to how files are written to, read and combined

commit b9149bde4f5b955118dfc7bee28001e9c4b05389
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Mar 8 15:53:06 2023 +1100

    Change of output in pwf.semifstatcatalogue to include threshold 2F and detection probability

commit 492744f1fd9de85eeccbec613576158e219c7d2b
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Mar 8 11:11:45 2023 +1100

    Addition of looping to lalpulsar_PiecewiseSearch.py

commit 030e0a59b15e4c206414578ff7bf6d95b9e07a9a
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Mar 7 11:23:30 2023 +1100

    Change mismatch file naming and update to SFT file writing to include changing strain

commit 70c82f892c899786f1fc3920fe3fa0d985160033
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Mar 1 13:37:02 2023 +1100

    Addition of ability to specify number of knots to use, instead of search duration

commit 90691b793d056f470d9276dd0c114d75fbd07a11
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Mar 1 10:42:33 2023 +1100

    Addition of BaseSeed for randomised parameters and SFTs

commit 9ff3d7f0609d73bcf21ac513966e0cccd7601820
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Feb 28 10:55:50 2023 +1100

    Addition of Non_Essential_Methods.py

commit 96a3fa96f01c1552a057d4cea4c48c108d2402e9
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Feb 27 15:12:38 2023 +1100

    Addition of option to write to OzSTAR local disk, fixed error with random signal params being duplicated between runs

commit 73bbcfdd9a72d2515cf1243b00e622d9390988d8
Author: Benjamin.Grace <Benjamin.Grace@ligo.org>
Date:   Wed Feb 22 16:00:33 2023 +1100

    Work around tqdm error and dependency issues fixed

commit c5300e5ddbaa9e75084642b047d103090e04e325
Merge: 2aed874ca1 003197654b
Author: Benjamin.Grace <Benjamin.Grace@ligo.org>
Date:   Fri Dec 9 11:55:26 2022 +1100

    Doing a merge

commit 003197654bda41e1173968b78a733df4a8bdd1db
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Dec 9 11:52:00 2022 +1100

    Fix big allowing for h_0 = 0. This version also will save the lowest mismatch value to a file (so you can create a histogram)

commit 2aed874ca1c429842d1c3d902a953789e4c14cfd
Merge: 4b0231967e ec7ec999
Author: Benjamin.Grace <Benjamin.Grace@ligo.org>
Date:   Fri Dec 9 10:35:44 2022 +1100

    Not sure what's happened here, version on OzSTAR previous to Karl's updates

commit ec7ec999
Author: Karl Wette <karl.wette@ligo.org>
Date:   Wed Nov 9 13:06:15 2022 +1100

    Simplify parameter space bounds, remove ntol/ktol evolution

commit cc9925d9
Author: Karl Wette <karl.wette@ligo.org>
Date:   Wed Nov 9 19:13:09 2022 +1100

    File output and logging improvements

commit 9c017af2
Author: Karl Wette <karl.wette@ligo.org>
Date:   Wed Nov 30 19:18:12 2022 +1100

    Tdata must be a float

commit eec004dd
Author: Karl Wette <karl.wette@ligo.org>
Date:   Wed Oct 5 16:50:51 2022 +1100

    Allow liblalpulsar C code to be interrupted with Ctrl+C

commit 988fc72b
Author: Karl Wette <karl.wette@ligo.org>
Date:   Wed Oct 5 13:23:48 2022 +1100

    Add copyright headers

commit f81652a4
Author: Karl Wette <karl.wette@ligo.org>
Date:   Wed Sep 28 17:31:38 2022 +1000

    Remove unused module imports

commit c199599a
Author: Karl Wette <karl.wette@ligo.org>
Date:   Wed Oct 5 13:12:34 2022 +1100

    Whitespace cleanup

commit fa996482
Merge: bbc6b5f3 56d66a70
Author: Karl Wette <karl.wette@ligo.org>
Date:   Fri Dec 2 13:54:33 2022 +1100

    Merge branch 'master' into PiecewiseModel

commit bbc6b5f3
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Sep 27 11:29:27 2022 +1000

    Removal of old and unused import statements

commit 589d97f3
Author: Karl Wette <karl.wette@ligo.org>
Date:   Mon Sep 26 13:41:36 2022 +1000

    EstimatingKnots.py: replace 'continue' (not in loop) with 'pass'

commit d05f666d
Author: Karl Wette <karl.wette@ligo.org>
Date:   Mon Sep 26 13:40:56 2022 +1000

    lalpulsar/python/lalpulsar/piecewise_model: fix import statements

commit 118eb34c
Author: Karl Wette <karl.wette@ligo.org>
Date:   Mon Sep 26 13:37:41 2022 +1000

    lalpulsar/bin/PiecewiseSearch/Makefile.am: add Python scripts

    - Rename PWFCommandLine.py to lalpulsar_PiecewiseSearch.py
    - Rename TBankCommandLine.py to lalpulsar_PiecewiseSearchTemplateBank.py

commit 9b0e7b3b
Author: Karl Wette <karl.wette@ligo.org>
Date:   Mon Sep 26 13:36:29 2022 +1000

    lalpulsar/python/lalpulsar/piecewise_model/Makefile.am: add Python modules

commit fc81c021
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Sep 23 16:03:25 2022 +1000

    Addition of python files

commit 72682bde
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Sep 13 16:13:01 2022 +1000

    Bug found and fixed! Was combination of a numerical issue and not correctly accounting for different piecewise segment lengths. Comments added. When run with the resetting methods and the PWFCommandLine.pu notebook, gives rise to a segmentation fault

commit c2d3bf46
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Aug 26 14:50:16 2022 +1000

    Comments and print outs for debugging

commit 2b38017d
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Aug 26 14:49:19 2022 +1000

    Change in function input

commit dcf96a46
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Aug 26 14:47:50 2022 +1000

    Commnent clean up

commit 21f4267a
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Aug 24 12:19:07 2022 +1000

    Updates to S2 methods and addition of padding flag options. Something currently not working, expected to be an error in either bound calculations or the resetting methods

commit f5b00a37
Author: Karl Wette <karl.wette@ligo.org>
Date:   Thu Aug 25 14:57:14 2022 +1000

    ComputeFstat: pass sourceDeltaT from FstatOptionalArgs thru to XLALCWMakeFakeData()

commit f8ebf345
Author: Karl Wette <karl.wette@ligo.org>
Date:   Sat Aug 6 15:26:52 2022 +1000

    Add build infrastructure for piecewise model functions and search scripts

commit 88479080
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Jul 13 11:28:57 2022 +1000

    Addition of XLALPiecewiseParameterBounds to return the bounds at a given dimension

commit df75440c
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jun 9 13:11:21 2022 +1000

    Addition of choosing flag options

commit 4dae0a7d
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Feb 7 10:56:32 2022 +1100

    Addition of nmin0 and nmax0 parameters

commit e4e7908f
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jul 8 14:47:13 2021 +1000

    Doxygen comments

commit 099af002
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jun 24 14:51:42 2021 +1000

    Neatening with Karl

commit bbb4ae61
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jun 3 11:08:33 2021 +1000

    Tidying and error messages

commit 435cee00
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri May 14 14:13:31 2021 +1000

    Addition of fmaxtrue parameter

commit 72c5e082
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu May 13 10:51:52 2021 +1000

    Changes to tolerance levels on k and n

commit a6b0bf35
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon May 10 13:33:37 2021 +1000

    Addition of S=2 option. Untested

commit 8f29dcc4
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon May 10 10:09:45 2021 +1000

    Addition of if statement in BoundExtrema function

commit 25842651
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Apr 28 15:44:44 2021 +1000

    Memory leak fix

commit 3906ac43
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Apr 28 12:14:28 2021 +1000

    Changes to N/KMinMax methods, generic tidying

commit 6443aeb5
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Apr 16 14:11:26 2021 +1000

    Removal of recursive resetting methods. Moving k criteria to f2 parameters

commit 8721fc43
Author: Karl Wette <karl.wette@ligo.org>
Date:   Thu Apr 8 09:41:56 2021 +1000

    Use the new LATTICE_TILING_PAD_NONE padding flag name

commit ebc9b12b
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Apr 1 14:50:36 2021 +1100

    Small changes

commit deb348c4
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Mar 22 11:17:00 2021 +1100

    Completion of advanced resetting methods for points outside the boundary.

    Currently runs without errors, however python self kills this process. Expected due to exceeding memory limitations. Perhaps will work if run on OzSTAR?

commit 7e8f9f80
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Mar 18 16:30:39 2021 +1100

    Addition of more advanced resetting points outside boundary methods. Specifically those for the first knot. Unfinished.

commit efabd257
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Tue Feb 23 16:15:53 2021 +1100

    Addition of methods to determine appropriate bounds for points selected outside of parameter space

commit 2f952f8e
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Feb 19 10:15:16 2021 +1100

    Simplification of header file. Addition of tau/k conversion method

commit bbb06775
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Sun Jan 10 17:35:55 2021 -0600

    Addition of PiecewiseModel notebook

commit 4b0231967eaa442aaa05ea18634548a1b1d4b596
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Feb 7 10:56:32 2022 +1100

    Addition of nmin0 and nmax0 parameters

commit 2f857901b7cc8fa21256b32a891c3928a380b5df
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon Nov 29 11:59:37 2021 +1100

    Addition of minor comments

commit b1b8b60973b93ed914355e0180120b9cde50d2ca
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jul 8 14:47:13 2021 +1000

    Doxygen comments

commit f97015540ad32208ae108ec477ae7e0ed3710e08
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jun 24 14:51:42 2021 +1000

    Neatening with Karl

commit 9bb79fc3239b4a6f91feb304ae4d43384698c483
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Jun 3 11:08:33 2021 +1000

    Tidying and error messages

commit ea4bbcffcecfc0ec9a0b6f802c6dd7d19209bdfc
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri May 14 14:13:31 2021 +1000

    Addition of fmaxtrue parameter

commit ddd8dccfc950b7cdbf9b8bae21619da4927fc058
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu May 13 10:51:52 2021 +1000

    Changes to tolerance levels on k and n

commit 775fe41326ce2413080c5df64a1435a321de7b8a
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon May 10 13:33:37 2021 +1000

    Addition of S=2 option. Untested

commit 852542b9d58a675bf8849967eee95264d666b762
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Mon May 10 10:09:45 2021 +1000

    Addition of if statement in BoundExtrema function

commit f47e57a9daa2ed715fdd5c5d90ea2ee65ff0b8ac
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Apr 28 15:44:44 2021 +1000

    Memory leak fix

commit e6fbc5e4ed17f1bd8c42e12a155e81c822596739
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Wed Apr 28 12:14:28 2021 +1000

    Changes to N/KMinMax methods, generic tidying

commit 78348585e2c3d3eca60874370d17c9f3ac8cf6b0
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Fri Apr 16 14:11:26 2021 +1000

    Removal of recursive resetting methods. Moving k criteria to f2 parameters

commit 7771b2c378d5776f9b97057334af02b9bbbb6fb7
Author: Karl Wette <karl.wette@ligo.org>
Date:   Thu Apr 8 09:41:56 2021 +1000

    Use the new LATTICE_TILING_PAD_NONE padding flag name

commit faf9c59bd67ed9747eaea02d935814f3b9a7e606
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Thu Apr 1 14:50:36 2021 +1100

    Small changes

commit 3c93f614677c94dab946c2ff5f673dfd03a32bc0
Author: Ben <benjamin.grace@LIGO.org>
Date:   Mon Mar 22 11:17:00 2021 +1100

    Completion of advanced resetting methods for points outside the boundary. Currently runs without errors, however python self kills this process. Expected due to exceeding memory limitations. Perhaps will work if run on OzSTAR?

commit b9dd7db37c1efa00b3e02d25b0bf319275255b7f
Author: Ben <benjamin.grace@LIGO.org>
Date:   Thu Mar 18 16:30:39 2021 +1100

    "Addition of more advanced resetting points outside boundary methods. Specifically those for the first knot. Unfinished.

commit 018b25c71506a2d063e5fff41638ac8afcd37595
Author: Ben <benjamin.grace@LIGO.org>
Date:   Tue Feb 23 16:15:53 2021 +1100

    Addition of methods to determine appropriate bounds for points selected outside of parameter space

commit 6a14a6dd1edcbe361fcb630bc80b6a1f33ffe8b1
Author: Ben <benjamin.grace@LIGO.org>
Date:   Fri Feb 19 10:15:16 2021 +1100

    Simplification of header file. Addition of tau/k conversion method

commit df2d0f21b6e127fd013074bc1fa624621b5cb2d5
Author: Ben <benjamin.grace@LIGO.org>
Date:   Mon Feb 8 10:25:52 2021 +1100

    Change to header file

commit e63470463ccc15a4386db907ecab6df50013f52e
Author: Ben <benjamin.grace@LIGO.org>
Date:   Thu Feb 4 16:03:49 2021 +1100

    Addition of PiecewiseModel notebook

commit 4fe4628979e140d338ac1499cf563308fda7ec19
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Sun Jan 10 17:41:25 2021 -0600

    A test function that squares an int. C file, line 800

commit c086937105c5ddd9ae8328d03bb8fe30b5a5cc6f
Author: Benjamin Grace <benjamin.grace@ligo.org>
Date:   Sun Jan 10 17:35:55 2021 -0600

    A test initial commit (header file), addition of squaring a number

PulsarCrossCorr_v2: fixes and enhancements related to timestamps

See merge request lscsoft/lalsuite!2352

Merge release branch from last release

See merge request lscsoft/lalsuite!2357

PulsarCrossCorr_v2: restored original APIs of deprecated functions and gave improved versions new names.  Also got rid of unused science flag vector.

Fix bundling of Python scripts in wheels

Closes #759 and #729

See merge request lscsoft/lalsuite!2356