Find scripts with path

git-svn-id: https://svn.ligo.caltech.edu/svn/bayeswave/trunk@40 c56465c9-8126-4a4f-9d7d-ac845eff4865

postprocess/run_skymap.sh

+
 #!/bin/bash
 # This script must be called by many_plots.sh!
 
+#getting path for BayesWaveBurst (need to make sure that the user PATH is set up)
+#temporsry fix
+pathtoBWB=$(which BayesWaveBurst)
+pathtoBWB=${pathtoBWB%src*}
+echo $pathtoBWB
+
 #cd chains
 #jobname="$(ls chains/*_signal_1_wavechain.dat.0)"
 #jobname="$(echo ${jobname:0:${#jobname}-25})"
@@ -9,7 +16,7 @@
 echo "# ra sin_dec" > skymap.txt
 chainFullName="$(ls chains/*signal_1_wavechain.dat.0)"
 awk '{print $2"   "$3}' $chainFullName >> skymap.txt
-/home/$USER/bayeswave/trunk/postprocess/bayestar_bin_samples skymap.txt --nside 2048 -o skymap.fits
+$pathtoBWB/postprocess/bayestar_bin_samples skymap.txt --nside 2048 -o skymap.fits
 echo "   ...sampling completed..."
-/home/$USER/bayeswave/trunk/postprocess/bayestar_plot_allsky skymap.fits --colormap=gist_heat_r -o skymap.png # --radec=20 30
+$pathtoBWB/postprocess/bayestar_plot_allsky skymap.fits --colormap=gist_heat_r -o skymap.png # --radec=20 30
 echo "   ...skymap completed..."