GlitchBuster + CBC

Including GlitchBuster as a preprocessing step with optional flag --GlitchBuster. In the future we might want to put the initialization after the CBC burnin or include the CBC in the residuals it gets passed.

Edit: Also now include fix to eigenvalue calculation as well

added CBC label

assigned to @tyson-littenberg, @katerina.chatziioannou, and @sophie.hourihane

added 44 commits

• a10412fb - First implementation Fisher update Neil
• 60aea722 - Use fixed epsilon for masses Fisher steps
• f9232329 - Fix BWFpeak for CBC output + Tobs > 1
• aa9a004b - Prevent fisher efix failures for lost chains
• 8730753d - Re-add globe lambda negative check
• a2212ce8 - Prevent negative lambdas in efix
• 9ee9fc73 - Attempt to prevent negative lambdas in Fisher
• c8bdad31 - NRTidal LAL comparison + v0 NRTidal_v2
• 3606589c - Fix Fisher matrix efix moving outside values waveform can handle
• f8476ada - DEBUGGING PRINT STATEMENTS + adding prior check to efix
• f50956c7 - Adding in useful functions
• f1ccd205 - Adding trackers for CBC proposals
• c8984353 - Initializing extrinsic CBC values and adding option to not modify them in setup_cbc_model.
• 4f02769f - Cleaning up debug statements and adding comments to efix.
• ac521f89 - Adding support for non-relative pathname for an XML file
• 380ae395 - Taking out line that sets small eigenvalues to 1 and renaming efix->eigen_value_rescaling
• ea29581b - Adding default disk and memory values for bayeswave and bayeswave_post jobs
• d31e57bb - adding glitchbuster to bayeswave
• ac419412 - integrate glitchbuster, replace file-based model
• 9bc6b553 - whoops, fix build after typo in cleaning up code
• 5b471897 - edited GlitchBuster so that it FFTs the fourier domain data instead of needing...
• 5604b112 - Changed main() so that GlitchBuster only ever runs on 0th iteration of loop
• 8350cc72 - Adding protection against going over Dmax in kickstart_glitch_model with glitchbuster
• da4084b7 - Fixed stupid >= typo
• 18738b89 - getting rid of timeData in initialize_data definition as it is unused
• d2d2fe16 - taking out timeData from initialize_data in BayesWavePost
• e1902ebe - Fixing linking errors and redefined functions between BayesCBC and GlitchBuster
• fd412bb5 - Updating GlitchBuster + BayesCBC so that when checkpointing finishes and the model begins,
• 1977c534 - Took out print statements and fixed xml def in BW_Flags
• 7e19131c - Adding check in distance jump so that it will never jump outside of prior
• d4f9bed6 - After BayesCBC, now data residual only subtracts wavelets from the 0th chain,...
• 19cfaf76 - BayesLine + Wavelet start now doesn't initailize asd to data residual
• 27ba6860 - GlitchBuster has non-set upperbound on wavelets
• 7905a956 - Changing RJMCMC Ncycle for wavelets with NcycleWavelet
• 4d979600 - Sepparating glitchbuster and wavelet start
• 9fb484d4 - Adding repeat wavelet test for glitch model
• 97cdfff3 - Actually setting glitchBusterFlag to False when it is not on
• 690a2a4f - Increasing transparency of time priors
• 6ea41380 - fixup! adding glitchbuster to bayeswave
• 4a01ac80 - increasing agg.path.chunksize for megaplot
• 4aa54d29 - Adding comments and fixing whitespace issues
• 87ac043e - More clarity for sampling and checking priors
• 4177b894 - Fixing typo in help
• 7364e2c5 - Adding --glitchBuster explination in --help

Compare with previous version

marked this merge request as draft from sophie.hourihane/bayeswave@6ea41380

changed the description

marked this merge request as ready

mentioned in commit e8578468

merged

mentioned in merge request !232 (closed)