v3-dockerfile-test-suite-python37

# This dockerfile is written automatically and should not be modified by hand.

FROM containers.ligo.org/docker/base:conda
LABEL name="bilby CI testing" \
maintainer="Gregory Ashton <gregory.ashton@ligo.org>"

RUN conda update -n base -c defaults conda

ENV conda_env python37

RUN conda create -n ${conda_env} python=3.7
RUN echo "source activate ${conda_env}" > ~/.bashrc
ENV PATH /opt/conda/envs/${conda_env}/bin:$PATH
RUN /bin/bash -c "source activate ${conda_env}"
RUN conda info
RUN python --version

# Install conda-installable programs
RUN conda install -n ${conda_env} -y matplotlib numpy scipy pandas astropy flake8 mock
RUN conda install -n ${conda_env} -c anaconda coverage configargparse future
RUN conda install -n ${conda_env} -c conda-forge black pytest-cov deepdish arviz

# Install pip-requirements
RUN pip install --upgrade pip
RUN pip install --upgrade setuptools coverage-badge parameterized

# Install documentation requirements
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc

# Install dependencies and samplers
RUN pip install corner healpy cython tables
RUN conda install -n ${conda_env} -c conda-forge dynesty emcee nestle ptemcee
RUN conda install -n ${conda_env} -c conda-forge pymultinest ultranest
RUN conda install -n ${conda_env} -c conda-forge cpnest kombine dnest4 zeus-mcmc
RUN conda install -n ${conda_env} -c conda-forge pytorch
RUN conda install -n ${conda_env} -c conda-forge theano-pymc
RUN conda install -n ${conda_env} -c conda-forge pymc3
RUN pip install nessai

# Install Polychord
RUN apt-get update --allow-releaseinfo-change
RUN apt-get install -y build-essential
RUN apt-get install -y libblas3 libblas-dev
RUN apt-get install -y liblapack3 liblapack-dev
RUN apt-get install -y libatlas3-base libatlas-base-dev
RUN apt-get install -y gfortran

RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && python setup.py --no-mpi install)

# Install PTMCMCSampler
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
&& (cd PTMCMCSampler && python setup.py install)

# Install GW packages
RUN conda install -n ${conda_env} -c conda-forge python-lalsimulation
RUN pip install ligo-gracedb gwpy ligo.skymap

# Add the ROQ data to the image
RUN mkdir roq_basis \
    && cd roq_basis \
    && wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/B_linear.npy \
    && wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/B_quadratic.npy \
    && wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/fnodes_linear.npy \
    && wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/fnodes_quadratic.npy \
    && wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/params.dat