Fix docker build

.pre-commit-config.yaml

@@ -15,14 +15,8 @@ repos:
     hooks:
     -   id: codespell
         args: [--ignore-words=.dictionary.txt]
--   repo: https://github.com/asottile/seed-isort-config
-    rev: v1.3.0
-    hooks:
-    -   id: seed-isort-config
-        args: [--application-directories, 'bilby/']
-        files: ^bilby/bilby_mcmc/
 -   repo: https://github.com/pre-commit/mirrors-isort
-    rev: v4.3.21
+    rev: v5.10.1
     hooks:
     -   id: isort # sort imports alphabetically and separates import into sections
         args: [-w=88, -m=3, -tc, -sp=setup.cfg ]

containers/dockerfile-template

@@ -26,11 +26,13 @@ RUN pip install --upgrade setuptools coverage-badge parameterized
 RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
 
 # Install dependencies and samplers
-RUN pip install corner theano healpy cython tables
+RUN pip install corner healpy cython tables
 RUN conda install -n ${{conda_env}} -c conda-forge dynesty emcee nestle ptemcee
 RUN conda install -n ${{conda_env}} -c conda-forge pymultinest ultranest
-RUN conda install -n ${{conda_env}} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
+RUN conda install -n ${{conda_env}} -c conda-forge cpnest kombine dnest4 zeus-mcmc
 RUN conda install -n ${{conda_env}} -c conda-forge pytorch
+RUN conda install -n ${{conda_env}} -c conda-forge theano-pymc
+RUN conda install -n ${{conda_env}} -c conda-forge pymc3
 RUN pip install nessai
 
 # Install Polychord

containers/v3-dockerfile-test-suite-python37

@@ -28,11 +28,13 @@ RUN pip install --upgrade setuptools coverage-badge parameterized
 RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
 
 # Install dependencies and samplers
-RUN pip install corner theano healpy cython tables
+RUN pip install corner healpy cython tables
 RUN conda install -n ${conda_env} -c conda-forge dynesty emcee nestle ptemcee
 RUN conda install -n ${conda_env} -c conda-forge pymultinest ultranest
-RUN conda install -n ${conda_env} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
+RUN conda install -n ${conda_env} -c conda-forge cpnest kombine dnest4 zeus-mcmc
 RUN conda install -n ${conda_env} -c conda-forge pytorch
+RUN conda install -n ${conda_env} -c conda-forge theano-pymc
+RUN conda install -n ${conda_env} -c conda-forge pymc3
 RUN pip install nessai
 
 # Install Polychord

containers/v3-dockerfile-test-suite-python38

@@ -28,11 +28,13 @@ RUN pip install --upgrade setuptools coverage-badge parameterized
 RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
 
 # Install dependencies and samplers
-RUN pip install corner theano healpy cython tables
+RUN pip install corner healpy cython tables
 RUN conda install -n ${conda_env} -c conda-forge dynesty emcee nestle ptemcee
 RUN conda install -n ${conda_env} -c conda-forge pymultinest ultranest
-RUN conda install -n ${conda_env} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
+RUN conda install -n ${conda_env} -c conda-forge cpnest kombine dnest4 zeus-mcmc
 RUN conda install -n ${conda_env} -c conda-forge pytorch
+RUN conda install -n ${conda_env} -c conda-forge theano-pymc
+RUN conda install -n ${conda_env} -c conda-forge pymc3
 RUN pip install nessai
 
 # Install Polychord

containers/v3-dockerfile-test-suite-python39

@@ -28,11 +28,13 @@ RUN pip install --upgrade setuptools coverage-badge parameterized
 RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
 
 # Install dependencies and samplers
-RUN pip install corner theano healpy cython tables
+RUN pip install corner healpy cython tables
 RUN conda install -n ${conda_env} -c conda-forge dynesty emcee nestle ptemcee
 RUN conda install -n ${conda_env} -c conda-forge pymultinest ultranest
-RUN conda install -n ${conda_env} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
+RUN conda install -n ${conda_env} -c conda-forge cpnest kombine dnest4 zeus-mcmc
 RUN conda install -n ${conda_env} -c conda-forge pytorch
+RUN conda install -n ${conda_env} -c conda-forge theano-pymc
+RUN conda install -n ${conda_env} -c conda-forge pymc3
 RUN pip install nessai
 
 # Install Polychord