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Commit 5742f936 authored by Colm Talbot's avatar Colm Talbot
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Fix docker build

parent 1b07e26f
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1 merge request!1048Fix docker build
......@@ -15,14 +15,8 @@ repos:
hooks:
- id: codespell
args: [--ignore-words=.dictionary.txt]
- repo: https://github.com/asottile/seed-isort-config
rev: v1.3.0
hooks:
- id: seed-isort-config
args: [--application-directories, 'bilby/']
files: ^bilby/bilby_mcmc/
- repo: https://github.com/pre-commit/mirrors-isort
rev: v4.3.21
rev: v5.10.1
hooks:
- id: isort # sort imports alphabetically and separates import into sections
args: [-w=88, -m=3, -tc, -sp=setup.cfg ]
......
......@@ -26,11 +26,13 @@ RUN pip install --upgrade setuptools coverage-badge parameterized
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner theano healpy cython tables
RUN pip install corner healpy cython tables
RUN conda install -n ${{conda_env}} -c conda-forge dynesty emcee nestle ptemcee
RUN conda install -n ${{conda_env}} -c conda-forge pymultinest ultranest
RUN conda install -n ${{conda_env}} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
RUN conda install -n ${{conda_env}} -c conda-forge cpnest kombine dnest4 zeus-mcmc
RUN conda install -n ${{conda_env}} -c conda-forge pytorch
RUN conda install -n ${{conda_env}} -c conda-forge theano-pymc
RUN conda install -n ${{conda_env}} -c conda-forge pymc3
RUN pip install nessai
# Install Polychord
......
......@@ -28,11 +28,13 @@ RUN pip install --upgrade setuptools coverage-badge parameterized
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner theano healpy cython tables
RUN pip install corner healpy cython tables
RUN conda install -n ${conda_env} -c conda-forge dynesty emcee nestle ptemcee
RUN conda install -n ${conda_env} -c conda-forge pymultinest ultranest
RUN conda install -n ${conda_env} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
RUN conda install -n ${conda_env} -c conda-forge cpnest kombine dnest4 zeus-mcmc
RUN conda install -n ${conda_env} -c conda-forge pytorch
RUN conda install -n ${conda_env} -c conda-forge theano-pymc
RUN conda install -n ${conda_env} -c conda-forge pymc3
RUN pip install nessai
# Install Polychord
......
......@@ -28,11 +28,13 @@ RUN pip install --upgrade setuptools coverage-badge parameterized
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner theano healpy cython tables
RUN pip install corner healpy cython tables
RUN conda install -n ${conda_env} -c conda-forge dynesty emcee nestle ptemcee
RUN conda install -n ${conda_env} -c conda-forge pymultinest ultranest
RUN conda install -n ${conda_env} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
RUN conda install -n ${conda_env} -c conda-forge cpnest kombine dnest4 zeus-mcmc
RUN conda install -n ${conda_env} -c conda-forge pytorch
RUN conda install -n ${conda_env} -c conda-forge theano-pymc
RUN conda install -n ${conda_env} -c conda-forge pymc3
RUN pip install nessai
# Install Polychord
......
......@@ -28,11 +28,13 @@ RUN pip install --upgrade setuptools coverage-badge parameterized
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install dependencies and samplers
RUN pip install corner theano healpy cython tables
RUN pip install corner healpy cython tables
RUN conda install -n ${conda_env} -c conda-forge dynesty emcee nestle ptemcee
RUN conda install -n ${conda_env} -c conda-forge pymultinest ultranest
RUN conda install -n ${conda_env} -c conda-forge cpnest pymc3 kombine dnest4 zeus-mcmc
RUN conda install -n ${conda_env} -c conda-forge cpnest kombine dnest4 zeus-mcmc
RUN conda install -n ${conda_env} -c conda-forge pytorch
RUN conda install -n ${conda_env} -c conda-forge theano-pymc
RUN conda install -n ${conda_env} -c conda-forge pymc3
RUN pip install nessai
# Install Polychord
......
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