Moritz Huebner: Added lost files back to git repo

LICENSE.md

+MIT License
+
+Copyright (c) 2018 Paul D. Lasky
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.md

+[![pipeline status](https://git.ligo.org/Monash/tupak/badges/master/pipeline.svg)](https://git.ligo.org/Monash/tupak/commits/master)
+[![coverage report](https://monash.docs.ligo.org/tupak/coverage_badge.svg)](
+https://monash.docs.ligo.org/tupak/htmlcov/)
+
+# Tupak
+
+Fulfilling all your gravitational wave dreams.
+
+## Example
+
+To get started with `tupak`, we have a few examples and tutorials:
+
+1. [Examples of injecting and recovering data](https://git.ligo.org/Monash/tupak/tree/master/examples/injection_examples)
+    * [A basic tutorial](https://git.ligo.org/Monash/tupak/blob/master/examples/injection_examples/basic_tutorial.py)
+    * [Create your own source model](https://git.ligo.org/Monash/tupak/blob/master/examples/injection_examples/create_your_own_source_model.py)
+    * [Create your own time-domain source model](https://git.ligo.org/Monash/tupak/blob/master/examples/injection_examples/create_your_own_time_domain_source_model.py)
+    * [How to specify the prior](https://git.ligo.org/Monash/tupak/blob/master/examples/injection_examples/how_to_specify_the_prior.py)
+    * [Using a partially marginalized likelihood](https://git.ligo.org/Monash/tupak/blob/master/examples/injection_examples/marginalized_likelihood.py)
+
+2. [Examples using open data](https://git.ligo.org/Monash/tupak/tree/master/examples/open_data_examples)
+    * [Analysing the first Binary Black hole detection, GW150914](https://git.ligo.org/Monash/tupak/blob/master/examples/open_data_examples/GW150914.py)
+
+3. [Notebook-style tutorials](https://git.ligo.org/Monash/tupak/tree/master/examples/tutorials)
+    * [Comparing different samplers](https://git.ligo.org/Monash/tupak/blob/master/examples/tutorials/compare_samplers.ipynb)
+    * [Visualising the output](https://git.ligo.org/Monash/tupak/blob/master/examples/tutorials/visualising_the_results.ipynb)
+
+
+## Installation
+
+`tupak` is developed to work with both Python 2.7+ and Python 3+. In the
+following, we assume you have a working python installation, [python
+pip](https://packaging.python.org/tutorials/installing-packages/#use-pip-for-installing),
+and [git](https://git-scm.com/).
+
+### Install tupak
+Clone the repository, install the requirements, and then install `tupak`.
+```bash
+$ git clone git@git.ligo.org:Monash/tupak.git
+$ cd tupak/
+$ pip install -r requirements.txt
+$ python setup.py install
+```
+
+Once you have run these steps, you have `tupak` installed. You can now try to
+run the examples. However, for many gravitational-wave related examples you'll
+also need to install `lalsuite`.
+
+### Install lalsuite
+We recommend you install `lalsuite` the simple way:
+
+```bash
+$ pip install lalsuite.
+```
+
+If this doesn't work, or you prefer to, you can also install from source.
+Head to
+[https://git.ligo.org/lscsoft/lalsuite](https://git.ligo.org/lscsoft/lalsuite)
+to check you have an account and SSH keys set up. Then,
+
+```bash
+$ git lfs install # you may need to install git-lfs first
+$ git clone git@git.ligo.org:lscsoft/lalsuite.git
+$ cd lalsuite
+$ ./00boot
+$ ./configure --prefix=${HOME}/lalsuite-install --disable-all-lal --enable-swig  --enable-lalsimulation
+$ make; make install
+```
+
+Warning: in the configure line here, we have disabled everything except
+lalsimulation. If you need other modules, see `./configure --help`.
+
+### Install pymultinest
+
+If you want to use the `pymultinest` sampler, you first need the
+MultiNest library to be installed to work properly. The full instructions can
+be found [here](https://johannesbuchner.github.io/PyMultiNest/install.html). We
+have also written [a shortened tl;dr here](./TLDR_MULTINEST.md).
+
+
+## Tests and coverage
+
+We have a variety of tests which can be found in the `tests` directory.  You
+can find a [current coverage report for master
+here.](https://monash.docs.ligo.org/tupak/htmlcov/).
+
+

requirements.txt

+future
+dynesty
+corner
+numpy>=1.9
+matplotlib>=2.0
+scipy
+gwpy
+pandas
+astropy
+pymultinest
+gwsurrogate
+NRSur7dq2
+nestle
+deepdish
+ptemcee
+mock

setup.py

+#!/usr/bin/env python
+
+from distutils.core import setup
+import subprocess
+
+# Write a version file containing the git hash and info
+try:
+    git_log = subprocess.check_output(
+        ['git', 'log', '-1', '--pretty=%h %ai']).decode('utf-8')
+    git_diff = (subprocess.check_output(['git', 'diff', '.'])
+                + subprocess.check_output(
+                    ['git', 'diff', '--cached', '.'])).decode('utf-8')
+    if git_diff == '':
+        status = '(CLEAN) ' + git_log
+    else:
+        status = '(UNCLEAN) ' + git_log
+except subprocess.CalledProcessError:
+    status = "NO VERSION INFORMATION"
+
+version_file = '.version'
+with open('tupak/' + version_file, 'w+') as f:
+    f.write(status)
+
+
+setup(name='tupak',
+      version='0.1',
+      packages=['tupak'],
+      package_dir={'tupak': 'tupak'},
+      package_data={'tupak': ['noise_curves/*.txt', 'prior_files/*.txt',
+                              version_file]}
+      )