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Commit d6e765a2 authored by Colm Talbot's avatar Colm Talbot
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fix likelihoods stored in dynesty posterior

parent b0382bfd
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1 merge request!208Resolve "Inconsistent saved `log_likelihood` values"
......@@ -133,12 +133,14 @@ class Dynesty(Sampler):
weights = np.exp(out['logwt'] - out['logz'][-1])
self.result.samples = dynesty.utils.resample_equal(
out.samples, weights)
self.result.log_likelihood_evaluations = out.logl
self.result.log_evidence = out.logz[-1]
self.result.log_evidence_err = out.logzerr[-1]
self.result.nested_samples = DataFrame(
out.samples, columns=self.search_parameter_keys)
self.result.nested_samples['weights'] = weights
idxs = [np.unique(np.where(self.result.samples[ii] == out.samples)[0])
for ii in range(len(out.logl))]
self.result.log_likelihood_evaluations = out.logl[idxs]
self.result.log_evidence = out.logz[-1]
self.result.log_evidence_err = out.logzerr[-1]
if self.plot:
self.generate_trace_plots(out)
......
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