GitLab

This reverts commit d0d6364f.

Printing out more accuracy in spline points to avoid bug

See merge request !230

Adding files delete_corruption.py and cp_files.py

See merge request !227

(cherry picked from commit ab59d416)

(cherry picked from commit 3547cb1e)

To run with these options, add `--smart-restart` to your `bayeswave_pipe` call

NOTE: All these updates have to do with condor.
Now when BayesWave is restarted (via submitting a dag on condor), instead of starting from the very beginning, it will see whether there are checkpoints that BW should be starting from. To do this it looks at the directory that is available on the remote node (which is empty if BW exited and non-empty if BW was evicted) and the directory that is available locally (on CIT).
By looking inside of the checkpoint files, cp_files.py decides which directory is more advanced. It runs on the more advanced one.
Then delete_corruption.py deletes any excess lines in the chain files that might be there after BW exited with a signal error.
This changes the default exit strategy (which was just to start from the beginning), and hopefully saves a ton of computation time.
Also this allows the user to resubmit dag files that might have failed for cluster errors instead of BayesWave errors.

Also added in CBC_triggerlist which sets the CBC_trigtime, which is only useful for the CBC branch, and does nothing on other branches.

cp_files.py takes the trigdir directory on the local machine (usually CIT) and decides which directory is more recent.
delete_corruption.py is then run on the directories to get rid of any extra lines that could have happened when the code crashed.

Updates to megaplot and adding BW_Flags

See merge request lscsoft/bayeswave!226

1) Signal model now does not have IFO in cornerplot name, and only links one time at the bottom of moments page
2) CBC_skymap shows up on skymap page
3) injected value plotted on cbc cornerplot
4) AD statistic succesfully printed on glitchOnly diagnostics page

2) Added Copywrite to BW_Flags

2) Fixed link to the bayeswave.run file
3) Got rid of extra evidence shown on splash page

2) Added titles to glitch and signal cornerplots
3) Added support for chirplets flag
4) Added support for glitch, signal model (not run concurrently, but separately)

2) added case for signal, glitch model (ie signal and glitch run sepparately)

Got rid of redundant read_xml_parameters in megaplot

Changing scatter plots in megaplot to plt.plot(x, y, ',') to make posteriors easier to see.

    1) Adding support for cleaning model
    2) Making megaplot python3 instead of 2
    3) Log scaling on spectrograms
    4) Plasma colomap on spectrograms
    5) Support for CBC, full, clean_only, CBC+Glitch, CBC+Signal
    6) Cornerplots for signal and glitch models
    7) CBC Cornerplots for cbc models

BW_Flags, can now read in BW information into python
    Call via
```
    from bayeswave_plot import BW_Flags as bwf

    runFlags = bwf.Flags(TRIGTIME_DIRECTORY)
    bwf.readbwb(runFlags)
```

Checkpointing Cache

See merge request !223

Fixed by adding a function that sets data->s from checkpoint

Adding checkpoint/asd_IFO.dat so that on checkpoint (and when cache is specified), instead of reading from the cache files, it will instead read from the checkpoint files. This update should get rid of the XLAL no frame file and signal 255 errors.

replace straight copies with memcpy

See merge request !216

Skip gaussian noise model, and adjustments to output pages

See merge request !208

Documentation for the BayesWave output page

See merge request !205