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Commit 102b1b46 authored by Gregory Ashton's avatar Gregory Ashton
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Adds a set of conda-based test images 

This is the first step in upgrading the test images to a more modern,
(and hopefully) stable, conda-based, templates. This will not change
anything in the backend, but needs to be merged to master so that Docker
can build the images.
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2 merge requests!646Add in plane spins,!644Adds a set of conda-based test images
Pipeline #88628 passed
Stage: test
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containers/Dockerfile-test-suite-python27 → containers/v2-dockerfile-test-suite-python35
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View file @ 102b1b46
FROM ubuntu:18.04
LABEL name="bilby Base Enterprise Linux 7" \
FROM continuumio/miniconda3
LABEL name="bilby Base miniconda3" \
maintainer="Gregory Ashton <gregory.ashton@ligo.org>" \
date="20190104"
date="20191114"
ENV PATH /opt/conda/bin:$PATH
RUN conda update -n base -c defaults conda
# Install backend
RUN apt-get update --fix-missing \
&& apt-get install -y libglib2.0-0 libxext6 libsm6 libxrender1 libgl1-mesa-glx \
dh-autoreconf build-essential libarchive-dev wget curl git libhdf5-serial-dev
ENV conda_env python35
# Install python2.7
RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda2-4.5.11-Linux-x86_64.sh -O ~/miniconda.sh && \
/bin/bash ~/miniconda.sh -b -p /opt/conda && \
rm ~/miniconda.sh && \
ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
echo "conda activate base" >> ~/.bashrc
RUN conda create -n ${conda_env} python=3.5
RUN echo "source activate ${conda_env}" > ~/.bashrc
ENV PATH /opt/conda/envs/${conda_env}/bin:$PATH
RUN /bin/bash -c "source activate ${conda_env}"
RUN conda info
RUN python --version
# Install conda-installable programs
RUN conda install -y numpy scipy matplotlib pandas==0.23
RUN conda install -n ${conda_env} -y matplotlib numpy scipy pandas astropy flake8
RUN conda install -n ${conda_env} -c anaconda coverage configargparse future
# Install conda-forge-installable programs
RUN conda install -n ${conda_env} -c conda-forge black ligo-gracedb gwpy lalsuite ligo.skymap pytest-cov
RUN conda install -c conda-forge deepdish
# Install pip-requirements
RUN pip install --upgrade pip
RUN pip install --upgrade setuptools coverage-badge
# Install requirements
RUN pip install --upgrade pip \
&& pip install --upgrade setuptools \
&& pip install future \
pycondor>=0.5 \
configargparse \
flake8 \
mock \
pipenv \
coverage \
pytest-cov \
coverage-badge
# Install documentation requirements
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
# Install additional bilby requirements
RUN pip install corner lalsuite astropy gwpy theano
RUN pip install corner lalsuite theano
# Install samplers
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine
# Install pymultinest requirements
......
containers/v2-dockerfile-test-suite-python36 0 → 100644
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View file @ 102b1b46
FROM continuumio/miniconda3
LABEL name="bilby Base miniconda3" \
maintainer="Gregory Ashton <gregory.ashton@ligo.org>" \
date="20191114"
RUN conda update -n base -c defaults conda
ENV conda_env python36
RUN conda create -n ${conda_env} python=3.6
RUN echo "source activate ${conda_env}" > ~/.bashrc
ENV PATH /opt/conda/envs/${conda_env}/bin:$PATH
RUN /bin/bash -c "source activate ${conda_env}"
RUN conda info
RUN python --version
# Install conda-installable programs
RUN conda install -n ${conda_env} -y matplotlib numpy scipy pandas astropy flake8
RUN conda install -n ${conda_env} -c anaconda coverage configargparse future
# Install conda-forge-installable programs
RUN conda install -n ${conda_env} -c conda-forge black ligo-gracedb gwpy lalsuite ligo.skymap pytest-cov
# Install pip-requirements
RUN pip install --upgrade pip
RUN pip install --upgrade setuptools coverage-badge
# Install documentation requirements
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
RUN pip install corner lalsuite theano
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine
# Install pymultinest requirements
RUN apt-get install -y libblas3 libblas-dev liblapack3 liblapack-dev \
libatlas3-base libatlas-base-dev cmake build-essential gfortran
# Install pymultinest
RUN git clone https://github.com/farhanferoz/MultiNest.git \
&& (cd MultiNest/MultiNest_v3.11_CMake/multinest && mkdir build && cd build && cmake .. && make)
ENV LD_LIBRARY_PATH $HOME/MultiNest/MultiNest_v3.11_CMake/multinest/lib:
# Install Polychord
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && make pypolychord MPI= && python setup.py install)
# Install PTMCMCSampler
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
&& (cd PTMCMCSampler && python setup.py install)
# Add the ROQ data to the image
RUN mkdir roq_basis \
&& cd roq_basis \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/B_linear.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/B_quadratic.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/fnodes_linear.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/fnodes_quadratic.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/params.dat \
containers/v2-dockerfile-test-suite-python37 0 → 100644
+ 60
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View file @ 102b1b46
FROM continuumio/miniconda3
LABEL name="bilby Base miniconda3" \
maintainer="Gregory Ashton <gregory.ashton@ligo.org>" \
date="20191114"
RUN conda update -n base -c defaults conda
ENV conda_env python37
RUN conda create -n ${conda_env} python=3.7
RUN echo "source activate ${conda_env}" > ~/.bashrc
ENV PATH /opt/conda/envs/${conda_env}/bin:$PATH
RUN /bin/bash -c "source activate ${conda_env}"
RUN conda info
RUN python --version
# Install conda-installable programs
RUN conda install -n ${conda_env} -y matplotlib numpy scipy pandas astropy flake8
RUN conda install -n ${conda_env} -c anaconda coverage configargparse future
# Install conda-forge-installable programs
RUN conda install -n ${conda_env} -c conda-forge black ligo-gracedb gwpy lalsuite ligo.skymap pytest-cov
# Install pip-requirements
RUN pip install --upgrade pip
RUN pip install --upgrade setuptools coverage-badge
# Install documentation requirements
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
RUN pip install corner lalsuite theano
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine
# Install pymultinest requirements
RUN apt-get install -y libblas3 libblas-dev liblapack3 liblapack-dev \
libatlas3-base libatlas-base-dev cmake build-essential gfortran
# Install pymultinest
RUN git clone https://github.com/farhanferoz/MultiNest.git \
&& (cd MultiNest/MultiNest_v3.11_CMake/multinest && mkdir build && cd build && cmake .. && make)
ENV LD_LIBRARY_PATH $HOME/MultiNest/MultiNest_v3.11_CMake/multinest/lib:
# Install Polychord
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && make pypolychord MPI= && python setup.py install)
# Install PTMCMCSampler
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
&& (cd PTMCMCSampler && python setup.py install)
# Add the ROQ data to the image
RUN mkdir roq_basis \
&& cd roq_basis \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/B_linear.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/B_quadratic.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/fnodes_linear.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/fnodes_quadratic.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/params.dat \
containers/v2-dockerfile-test-suite-python38 0 → 100644
+ 60
− 0
View file @ 102b1b46
FROM continuumio/miniconda3
LABEL name="bilby Base miniconda3" \
maintainer="Gregory Ashton <gregory.ashton@ligo.org>" \
date="20191114"
RUN conda update -n base -c defaults conda
ENV conda_env python38
RUN conda create -n ${conda_env} python=3.8
RUN echo "source activate ${conda_env}" > ~/.bashrc
ENV PATH /opt/conda/envs/${conda_env}/bin:$PATH
RUN /bin/bash -c "source activate ${conda_env}"
RUN conda info
RUN python --version
# Install conda-installable programs
RUN conda install -n ${conda_env} -y matplotlib numpy scipy pandas astropy flake8
RUN conda install -n ${conda_env} -c anaconda coverage configargparse future
# Install conda-forge-installable programs
RUN conda install -n ${conda_env} -c conda-forge black ligo-gracedb gwpy lalsuite ligo.skymap pytest-cov
# Install pip-requirements
RUN pip install --upgrade pip
RUN pip install --upgrade setuptools coverage-badge
# Install documentation requirements
RUN pip install sphinx numpydoc nbsphinx sphinx_rtd_theme sphinx-tabs autodoc
RUN pip install corner lalsuite theano
RUN pip install cpnest dynesty emcee nestle ptemcee pymc3 pymultinest kombine
# Install pymultinest requirements
RUN apt-get install -y libblas3 libblas-dev liblapack3 liblapack-dev \
libatlas3-base libatlas-base-dev cmake build-essential gfortran
# Install pymultinest
RUN git clone https://github.com/farhanferoz/MultiNest.git \
&& (cd MultiNest/MultiNest_v3.11_CMake/multinest && mkdir build && cd build && cmake .. && make)
ENV LD_LIBRARY_PATH $HOME/MultiNest/MultiNest_v3.11_CMake/multinest/lib:
# Install Polychord
RUN git clone https://github.com/PolyChord/PolyChordLite.git \
&& (cd PolyChordLite && make pypolychord MPI= && python setup.py install)
# Install PTMCMCSampler
RUN git clone https://github.com/jellis18/PTMCMCSampler.git \
&& (cd PTMCMCSampler && python setup.py install)
# Add the ROQ data to the image
RUN mkdir roq_basis \
&& cd roq_basis \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/B_linear.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/B_quadratic.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/fnodes_linear.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/fnodes_quadratic.npy \
&& wget https://git.ligo.org/lscsoft/ROQ_data/raw/master/IMRPhenomPv2/4s/params.dat \
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