Add run statistics to the dynesty meta data

See merge request !969

Replace deprecated numpy aliases of builtins

See merge request !970

bilby/gw/likelihood.py: Fix a bug in the algorithm to determine time resolution of ROQ

See merge request !967

Resolve "Time to refactor utils?"

Closes #509

See merge request !873

Resolve "Default 'walks' for dynesty"

Closes #557

See merge request lscsoft/bilby!961

Fix _base_roq_waveform

See merge request lscsoft/bilby!959

Add dynesty unit plot

See merge request lscsoft/bilby!954

Add an extras requires to enable downstream packages to depend on bilby[gw]

See merge request lscsoft/bilby!939

Fix pickle

See merge request lscsoft/bilby!932

Make building distance marginalization lookup table faster

See merge request lscsoft/bilby!957

Add errstate ignore to the gw.conversion module

See merge request lscsoft/bilby!952

Switch to using .size instead of len

See merge request lscsoft/bilby!951

Resolve "Sample from the prior test failing due to timeout"

Closes #565

See merge request lscsoft/bilby!950

Add MCMC combine method and improve shuffle behaviour when combining results

See merge request !945

Gregory Ashton authored 3 years ago and Moritz Huebner committed 3 years ago

Note: this will change the default behaviour when combining both MCMC
and nested samples. Instead of shuffling the results together, they will
be unshuffled enabling converge checks of the individual chains.
- Add option to shuffle posteriors when combining (default to false)
- Add mcmc sample combine

Increase the default dynesty checkpoint time to 30 minutes

See merge request lscsoft/bilby!940

Add exists_ok to mkdir

See merge request lscsoft/bilby!946

Gregory Ashton authored 3 years ago and Moritz Huebner committed 3 years ago

Cherry picked results from !905:
- Add the exist_ok=True flag to mkdirs resolving errors caused when the
directory is created before it is written (common on large-scale HTC
runs).

Make tables an optional requirement

Closes #561

See merge request lscsoft/bilby!930

HDF5: Fix loading meta data, booleans, string lists

See merge request !941

Improvements to the core prior class

See merge request lscsoft/bilby!944

Gregory Ashton authored 3 years ago and Moritz Huebner committed 3 years ago

Cherry picked results from !905:
- Add ignore errstate to avoid warning messages
- Add helper properties for the width, non_fixed_keys, fixed_keys, and constraint_keys
- Add constraints to the ConditionalPrior

Suppress the error message when creating injections

See merge request lscsoft/bilby!938

Encapsulate GMST method in gw.utils

See merge request lscsoft/bilby!947

Gregory Ashton authored 3 years ago and Moritz Huebner committed 3 years ago

Cherry picked from !905
- Encapsulate all calls to lal.GreenwichMeanSiderealTime in a function
- Add explicit conversion to a float to capture 1D arrays

Improvements to bilby.gw

See merge request lscsoft/bilby!948