Merge branch 'pipe-dev' into 'master'

See merge request lscsoft/bayeswave!33

Major overhauls to pipeline infrastructure

See merge request lscsoft/bayeswave!31

(cherry picked from commit b2340762)

5ee3f366 Cleaner UI for singularity usage, updated singularity requirments
70dbfc04 removing singularity version requirement; handled by the OSG

Updating container names for publication in CI script

See merge request lscsoft/bayeswave!29

Updates To Continuous Deployment

See merge request lscsoft/bayeswave!21

overhaul ci script

added O3dev as a ref to contain and test

Fix residual histogram plotting code

See merge request lscsoft/bayeswave!19

1. Make error message on residuals histogram failure more informative
2. Add if-else which checks if `bayeswave.run` has the `Command` on line 9. If not, it reads line 8.

1. Change `mod` to `model`  to in line 1412.
2. Add item to `hashlist` (line 1395) to include Virgo in histogram plotting.

remove mention of CW/lalapps from contribution guide

See merge request lscsoft/bayeswave!18

Docs Update

See merge request lscsoft/bayeswave!17

support for trigger time systematic offset

See merge request lscsoft/bayeswave!16

Fpeak pipe

See merge request lscsoft/bayeswave!15

Updating support for fpeak calculation.   BayesWaveFpeak is a modified version of BayesWavePost which conditions the high frequency spectrum of a waveform reconstruction and locates the maximum.   This commit updates the pipele   This commit updates the pipeline to provide support using modern config files to that code

Megaplot string handling

See merge request lscsoft/bayeswave!14

Megasky dev

See merge request lscsoft/bayeswave!13

Add mdc fetching code that was previously deleted, add lines which plot and calculate searched sky area for injections, remove pylal functions

ln 167: Added rstrip() to `cmdline = lines[8].rstrip().split(' ')`
Previously, an invisible \n character was read in as part of the command-line string.
When parsing the command line, this newline character was carried along as part of the Bayeswave arguments.
For example, rather than reading ifo 1 to be 'L1', ifo 1 was defined as the string 'L1\n'.
The rstrip() command removes all trailing whitespace (including '\n') from the command line before
it is parsed into separate arguments.

ln 855:
plt.title('Spectrogram of median {0} waveform in {1}, Q={2}'.format(model.replace('_','\_'),ifoNames[int(ifo)], Q))
When the variable "model" contained an underscore, matplotlib attempted to interpret as a latex subscript and threw an error.
The substition '_' --> '\_' ensures that any '_' characters are interpreted as string underscores,
not subscripts.

final instances of james-clark -> lscsoft

See merge request lscsoft/bayeswave!12

corrected links to lscsoft, not james-clark

See merge request lscsoft/bayeswave!11

Docs

See merge request lscsoft/bayeswave!10