Added support for submitting jobs to the Open Science Grid

Closes #103

See merge request !131

I don't agree with most of this, for the record

the file transfer mechanism dumps everything in the run directory, so the job need to be told to use just the file as it will exist on the execute machine, not what it is on the submit machine

if we specify `transfer_output_files = results_GW123456/results`, the given directory will be transferred back to `{initialdir}/results`, not `{initialdir}/results_GW123456/results` like we actually want, so we should just specify `transfer_output_files = results_GW123456` for all jobs

@james-clark tells me this isn't the most robust system

This commit is a little larger than planned, but does the following:

- abstracts checkpointing options to a method, and updates them to the
  minimal working set
- abstracts condor file transfer options to a method, and implements for
  pesummary jobs
- adds OSG running options to jobs and the `--osg` command-line option
  for `bilby_pipe`

The above necessitated a bit of restructuring in some methods to support adding extra `requirements` for jobs

should make handling what lines get included a bit easier

The skymap generation is reasonably problematic. This catched any
exception and prints a lot message to ensure other files are still
generated.

remove double escape from prior

See merge request !137

Move the review ini files to the output directory

See merge request !136

Collection of minor fixes

See merge request !134

- Switch order of duration check for ROQ weights step (this previously
  failed as the duration gets modified)
- Remove print os environ statement left in X509 from testing
- Add summary pages to fiducial runs

Plot tweaks

See merge request !135

Colm Talbot authored 5 years ago and Gregory Ashton committed 5 years ago

This reverts commit 5f609df5.

Version 0.2.1 release

See merge request !130

Update the distance priors for the standard priors and lookups

See merge request !132

Fix compatibility issues with bilby 0.5.2

See merge request !133

Resolve "Add documentation on installing via conda"

Closes #101

See merge request !129

Allow rescaled priors from gracedb

See merge request !123

Resolve "Add calibration to online runs"

Closes #102

See merge request !128

Remove C.I. install of black

See merge request !127

Simplify C.I. remove installation steps (now done in C.I. builds)

See merge request !126

Update dependencies and C.I.

Closes #100

See merge request !118

- Add back in test that failed due to pesummary issue
- Simplify pre-CI installation

Set channels to default

See merge request !125