Resolve "Sample from the prior test failing due to timeout"

Closes #565

See merge request !950

Add MCMC combine method and improve shuffle behaviour when combining results

See merge request !945

Gregory Ashton authored 3 years ago and Moritz Huebner committed 3 years ago

Note: this will change the default behaviour when combining both MCMC
and nested samples. Instead of shuffling the results together, they will
be unshuffled enabling converge checks of the individual chains.
- Add option to shuffle posteriors when combining (default to false)
- Add mcmc sample combine

Increase the default dynesty checkpoint time to 30 minutes

See merge request !940

Add exists_ok to mkdir

See merge request !946

Gregory Ashton authored 3 years ago and Moritz Huebner committed 3 years ago

Cherry picked results from !905:
- Add the exist_ok=True flag to mkdirs resolving errors caused when the
directory is created before it is written (common on large-scale HTC
runs).

Make tables an optional requirement

Closes #561

See merge request !930

HDF5: Fix loading meta data, booleans, string lists

See merge request !941

Improvements to the core prior class

See merge request !944

Gregory Ashton authored 3 years ago and Moritz Huebner committed 3 years ago

Cherry picked results from !905:
- Add ignore errstate to avoid warning messages
- Add helper properties for the width, non_fixed_keys, fixed_keys, and constraint_keys
- Add constraints to the ConditionalPrior

Suppress the error message when creating injections

See merge request !938

Encapsulate GMST method in gw.utils

See merge request !947

Gregory Ashton authored 3 years ago and Moritz Huebner committed 3 years ago

Cherry picked from !905
- Encapsulate all calls to lal.GreenwichMeanSiderealTime in a function
- Add explicit conversion to a float to capture 1D arrays

Improvements to bilby.gw

See merge request !948

Gregory Ashton authored 3 years ago and Moritz Huebner committed 3 years ago

Cherry picked from !905
- Add parameter sets to the source file
- Add parameter properties to the CBC prior files (e.g. prior.tidal)
- Suppress errstate warnings in the prior and likelihood
- Fix bug in rescale for 1D objects

Resolve "Unclear Error Message if module other than bilby is specified"

Closes #487

See merge request !935

Reduce time required for the sampler tests

See merge request !949

Remove deprecated functions/classes

See merge request !936

Remove pin on the numpy version

Closes #555

See merge request !934

bilby/gw/likelihood.py: speed up ROQ weight calculation with IFFT

See merge request !903

Reduce imports

Closes #558

See merge request !933

Add requirements to MANIFEST

See merge request !929

Version 1.1.0 release

See merge request !928

Fix MultiNest periodic keys

See merge request !927

Some changes to the results file for reweighting and uses of reweighted results

See merge request !856